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[172165_x_at]

Description F21D9.3 /REP_DB=WormBase Gene ID /WP=CE18629 /TR=Q9XV72 /GB=CAB04162.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 9.4
(-2.6)
A 		14.6
(-2)
A 		6.2
(-3)
A 		54.6
(3)
A 		48
B 24
(1.1)
A 		12.2
(-1.4)
A 		4.6
(-3)
A 		32.8
(3)
A 		28
C 3.7
(-3)
A 		7.4
(-2.7)
A 		3.5
(-3)
A 		82.2
(3)
P 		79
avr 12.4
(-2.1) 		11.4
(-2.2) 		4.8
(-3) 		56.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 14.6
(-1.4)
A 		4.9
(-3)
A 		5.7
(-2.9)
A 		41.2
(3)
A 		7.1
(-2.6)
A 		32.2
(1.5)
A 		36
B 2.5
(-3)
A 		6.3
(-2.5)
A 		3.5
(-2.9)
A 		46.7
(3)
A 		13.7
(-1.5)
A 		36.1
(1.6)
A 		44
C 5
(-2.7)
A 		3.5
(-3)
A 		28.3
(1.1)
A 		3.3
(-3)
A 		39.6
(3)
A 		23.2
(0.3)
A 		36
avr 7.4
(-2.4) 		4.9
(-3) 		12.5
(-1.2) 		30.4
(3) 		20.1
(0.6) 		30.5
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.4
(-1.3)
A 		3.2
(-1.5)
A 		1.6
(-3)
A 		8
(3)
A 		6
B 7.7
(3)
A 		3
(-1.3)
A 		1.1
(-3)
A 		7
(2.4)
A 		7
C 1.2
(-3)
A 		2.1
(-2.6)
A 		1.2
(-3)
A 		13.9
(3)
P 		13
avr 4.1
(-1) 		2.8
(-1.9) 		1.3
(-3) 		9.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.7
(-2)
A 		1.8
(-2.6)
A 		1.2
(-3)
A 		10.5
(3)
A 		2.2
(-2.4)
A 		7.8
(1.3)
A 		9
B 0.9
(-3)
A 		2.1
(-2.4)
A 		0.8
(-3)
A 		12.4
(2.5)
A 		5.6
(-0.7)
A 		13.5
(3)
A 		13
C 1.9
(-2.4)
A 		1.1
(-2.8)
A 		7.2
(0.2)
A 		0.7
(-3)
A 		12.8
(3)
A 		7.8
(0.5)
A 		12
avr 1.8
(-2.9) 		1.7
(-3) 		3.1
(-2) 		7.9
(1.7) 		6.9
(0.9) 		9.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172165_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14188
Sequence Type Exemplar sequence
Representative Public ID F21D9.3 NCBI
Target Description F21D9.3 /REP_DB=WormBase Gene ID /WP=CE18629 /TR=Q9XV72 /GB=CAB04162.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075345 NCBI Caenorhabditis elegans F21D9.3 (F21D9.3) mRNA, complete cds. 11/11 None
F21D9.3 ENSEMBL cdna:known chromosome:CEL140:V:19260156:19260326:-1 gene:F21D9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19260155-19260326(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21D9.3
Entrez Gene 184773 Entrez gene
SwissProt Q9XV72 EMBL-EBI
WormBase CE18629 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507746.1 1 5-24
F21D9.3 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:172165_X_AT
atgtatttacttttgacgcttctcttcgtcctcttcttttccggaagcactctgcttgcc
caatgctctggaaagaaaaagggagcaacttctgccaaaaggaaaatcttcaacgatgcg
cccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATTTACTTTTGACGCTTCTCT 643 47 13 Antisense
TGTATTTACTTTTGACGCTTCTCTT 563 559 14 Antisense
TATTTACTTTTGACGCTTCTCTTCG 115 661 16 Antisense
TTTACTTTTGACGCTTCTCTTCGTC 543 673 18 Antisense
TCTTTTCCGGAAGCACTCTGCTTGC 370 615 47 Antisense
TCTGCTTGCCCAATGCTCTGGAAAG 602 609 63 Antisense
GCTTGCCCAATGCTCTGGAAAGAAA 651 305 66 Antisense
GAAAAAGGGAGCAACTTCTGCCAAA 426 355 87 Antisense
AAGGGAGCAACTTCTGCCAAAAGGA 571 157 91 Antisense
GCAACTTCTGCCAAAAGGAAAATCT 456 319 97 Antisense
AGGAAAATCTTCAACGATGCGCCCG 177 55 112 Antisense
Sequence Source Affymetrix Proprietary Database