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[172163_x_at]

Description C06C6.8 /REP_DB=WormBase Gene ID /WP=CE17372 /TR=O62035 /GB=CAB07559.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 20      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 61.7
(-0.9)
A 		40.3
(-2)
A 		22.1
(-3)
A 		135.6
(3)
A 		114
B 37.2
(-1.5)
A 		85.1
(3)
A 		75.8
(2.1)
A 		21.8
(-3)
A 		63
C 67.9
(-0.1)
A 		38.3
(-1.7)
A 		14.4
(-3)
A 		123.3
(3)
A 		109
avr 55.6
(-1.1) 		54.6
(-1.2) 		37.4
(-3) 		93.6
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 12.8
(-3)
A 		15
(-2.9)
A 		75.2
(0.1)
A 		101.1
(1.3)
A 		135.1
(3)
A 		31.6
(-2.1)
A 		122
B 15.3
(-3)
A 		26
(-2.4)
A 		94.2
(1.4)
A 		53.1
(-0.9)
A 		124.1
(3)
A 		39.3
(-1.7)
A 		109
C 48.9
(-3)
A 		78.6
(-0.3)
A 		73.6
(-0.8)
A 		115.5
(3)
A 		105.3
(2.1)
A 		69.9
(-1.1)
A 		67
avr 25.7
(-3) 		39.9
(-2.1) 		81
(0.5) 		89.9
(1) 		121.5
(3) 		46.9
(-1.7) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 22.5
(3)
A 		8.7
(-2)
A 		5.8
(-3)
A 		19.8
(2)
A 		17
B 11.9
(-0.3)
A 		21
(3)
A 		17.6
(1.8)
A 		4.6
(-3)
A 		16
C 22.5
(3)
A 		11
(-0.9)
A 		5
(-3)
A 		20.8
(2.4)
A 		18
avr 19
(3) 		13.6
(-0.4) 		9.5
(-3) 		15.1
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 2.4
(-3)
A 		5.3
(-2.5)
A 		16.4
(-0.8)
A 		25.6
(0.6)
A 		40.8
(3)
A 		7.7
(-2.2)
A 		38
B 5.3
(-3)
A 		8.7
(-2.5)
A 		22.9
(-0.7)
A 		14.1
(-1.8)
A 		50.4
(3)
A 		14.7
(-1.7)
A 		45
C 18.1
(-3)
A 		24
(-0.8)
A 		18.7
(-2.8)
A 		23.2
(-1.1)
A 		34.1
(3)
A 		23.4
(-1)
A 		16
avr 8.6
(-3) 		12.7
(-2.3) 		19.3
(-1.1) 		21
(-0.8) 		41.8
(3) 		15.3
(-1.8) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172163_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13288
Sequence Type Exemplar sequence
Representative Public ID C06C6.8 NCBI
Target Description C06C6.8 /REP_DB=WormBase Gene ID /WP=CE17372 /TR=O62035 /GB=CAB07559.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074613 NCBI Caenorhabditis elegans C06C6.8 (C06C6.8) mRNA, complete cds. 11/11 None
SNAP00000040510 ENSEMBL cdna:SNAP chromosome:CEL140:V:15999780:16000311:1 11/11 None
GENEFINDER00000040520 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15999877:16000311:1 10/11 None
C06C6.8 ENSEMBL cdna:known chromosome:CEL140:V:15999771:16000349:1 gene:C06C6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074612 2/11 Cross Hyb Matching Probes A 
SNAP00000040509 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040517 2/11 Cross Hyb Matching Probes None
SNAP00000043431 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043439 1/11 Cross Hyb Matching Probes None
C06C6.9 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15999779-16000311(+) 100.0 100.0
chrV:15990088-15999328(-) 92.35 92.35
Public Domain and Genome References
Gene Title
Ensembl C06C6.8
Entrez Gene 180066 Entrez gene
SwissProt O62035 EMBL-EBI
WormBase CE17372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07559 Hypothetical protein C06C6.8 [Caenorhabditis elegans] ref|NP_507014.1| C06C6.8 [Caenorhabditis elegans] 1.0E-46
blast CAB07560 Hypothetical protein C06C6.9 [Caenorhabditis elegans] ref|NP_507013.1| C06C6.9 [Caenorhabditis elegans] 1.0E-40
blast CAB07559 Hypothetical protein C06C6.8 [Caenorhabditis elegans] ref|NP_507014.1| C06C6.8 [Caenorhabditis elegans] 2.0E-40
blast CAB04329 Hypothetical protein F36G9.15 [Caenorhabditis elegans] ref|NP_507010.1| F36G9.15 [Caenorhabditis elegans] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 1.2E-86
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 2.9E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507014.1 1 4-26
C06C6.8 1 4-26
SNAP00000040510 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:172163_X_AT
gagcattactctctatttcggaccatttcttttgctgatcgtctctattgtaaattgcca
atcaaagaagaagtttaaagacgatggaagagtggacctagtcccccgaaacgcgccagt
tcgcccggaccctgtaaaggaaacatcggcgcagacttgtccgactgcacagaccccgcc
agcaaaaacaccaatggagaggagtggaaatgtggctgaggacactctcgcaaatgtgaa
atctttgccgccggagaagtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATTACTCTCTATTTCGGACCA 161 387 39 Antisense
ATTTCGGACCATTTCTTTTGCTGAT 44 17 53 Antisense
TTCTTTTGCTGATCGTCTCTATTGT 597 689 65 Antisense
TCGTCTCTATTGTAAATTGCCAATC 389 605 77 Antisense
ATGGAAGAGTGGACCTAGTCCCCCG 25 53 122 Antisense
GGACCCTGTAAAGGAAACATCGGCG 105 523 165 Antisense
GGAAACATCGGCGCAGACTTGTCCG 630 527 177 Antisense
ACCCCGCCAGCAAAAACACCAATGG 697 89 211 Antisense
GGAGAGGAGTGGAAATGTGGCTGAG 184 519 234 Antisense
TGTGGCTGAGGACACTCTCGCAAAT 111 555 249 Antisense
GAAATCTTTGCCGCCGGAGAAGTCG 8 353 276 Antisense
Sequence Source Affymetrix Proprietary Database