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[172162_x_at] --- /// --- /// ---

Description F16D3.6 /REP_DB=WormBase Gene ID /WP=CE09439 /TR=Q19494 /GB=CAB01498.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 841
1 2 3 4 range
A 40.1
(-2.7)
A 		7.7
(-3)
A 		40.6
(-2.7)
A 		600.5
(3)
P 		593
B 76.7
(-2.6)
A 		34.8
(-3)
A 		41.2
(-2.9)
A 		751.9
(3)
P 		717
C 43.7
(-2.9)
A 		39
(-2.9)
A 		28.7
(-3)
A 		848.6
(3)
P 		820
avr 53.5
(-2.8) 		27.2
(-3) 		36.8
(-2.9) 		733.7
(3) 		707

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 71.6
(-1.5)
A 		49
(-2.7)
A 		43.3
(-3)
A 		57.7
(-2.2)
A 		146
(2.4)
P 		157.9
(3)
P 		115
B 53.7
(-2.6)
A 		50.5
(-2.7)
A 		41.2
(-3)
A 		45
(-2.9)
A 		92.8
(-1.3)
P 		224.2
(3)
P 		183
C 29.8
(-3)
A 		105.4
(0.8)
A 		56.7
(-1.7)
A 		71.6
(-0.9)
A 		104
(0.7)
P 		149.9
(3)
P 		120
avr 51.7
(-2.8) 		68.3
(-2) 		47.1
(-3) 		58.1
(-2.5) 		114.3
(0.1) 		177.3
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 14.6
(-2.1)
A 		1.7
(-3)
A 		10.6
(-2.4)
A 		87.9
(3)
P 		86
B 24.4
(-2.4)
A 		8.6
(-3)
A 		9.5
(-3)
A 		160.2
(3)
P 		152
C 14.5
(-2.8)
A 		11.2
(-2.9)
A 		10
(-3)
A 		143.1
(3)
P 		133
avr 17.8
(-2.5) 		7.2
(-3) 		10
(-2.9) 		130.4
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 13.2
(-2.3)
A 		17.4
(-1.6)
A 		9.4
(-3)
A 		14.6
(-2.1)
A 		44
(3)
P 		38.4
(2)
P 		35
B 18.7
(-2.3)
A 		16.8
(-2.4)
A 		10
(-3)
A 		11.9
(-2.8)
A 		37.7
(-0.7)
P 		83.6
(3)
P 		74
C 11.1
(-3)
A 		32.2
(0.2)
A 		14.4
(-2.5)
A 		14.4
(-2.5)
A 		33.7
(0.5)
P 		50.2
(3)
P 		39
avr 14.3
(-2.6) 		22.1
(-1.6) 		11.3
(-3) 		13.6
(-2.7) 		38.5
(0.5) 		57.4
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172162_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1386
Sequence Type Exemplar sequence
Representative Public ID F16D3.6 NCBI
Target Description F16D3.6 /REP_DB=WormBase Gene ID /WP=CE09439 /TR=Q19494 /GB=CAB01498.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060590, NM_059871, NM_067936
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059871 NCBI Caenorhabditis elegans F16D3.6 (F16D3.6) mRNA, complete cds. A 
NM_067936 NCBI Caenorhabditis elegans B0546.5 (B0546.5) mRNA, complete cds. A 
NM_060590 NCBI Caenorhabditis elegans F35E2.1 (F35E2.1) mRNA, complete cds. A 
F35E2.1 ENSEMBL cdna:known chromosome:CEL140:I:11746848:11748884:-1 gene:F35E2.1 A 
F16D3.6 ENSEMBL cdna:known chromosome:CEL140:I:8383615:8385660:1 gene:F16D3.6 A 
B0546.5 ENSEMBL cdna:known chromosome:CEL140:IV:3388073:3390084:-1 gene:B0546.5 A 
GENEFINDER00000041145 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11746848:11748884:-1 None
SNAP00000036929 ENSEMBL cdna:SNAP chromosome:CEL140:I:8382862:8385660:1 None
F16D3.6 ENSEMBL cdna:known chromosome:CEL140:I:8383615:8385660:1 gene:F16D3.6 A 
NM_067936 NCBI Caenorhabditis elegans B0546.5 (B0546.5) mRNA, complete cds. A 
B0546.5 ENSEMBL cdna:known chromosome:CEL140:IV:3388073:3390084:-1 gene:B0546.5 A 
F35E2.1 ENSEMBL cdna:known chromosome:CEL140:I:11746848:11748884:-1 gene:F35E2.1 A 
SNAP00000036929 ENSEMBL cdna:SNAP chromosome:CEL140:I:8382862:8385660:1 None
GENEFINDER00000041145 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11746848:11748884:-1 None
NM_059871 NCBI Caenorhabditis elegans F16D3.6 (F16D3.6) mRNA, complete cds. A 
NM_060590 NCBI Caenorhabditis elegans F35E2.1 (F35E2.1) mRNA, complete cds. A 
NM_067936 NCBI Caenorhabditis elegans B0546.5 (B0546.5) mRNA, complete cds. A 
B0546.5 ENSEMBL cdna:known chromosome:CEL140:IV:3388073:3390084:-1 gene:B0546.5 A 
SNAP00000001412 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3388047:3388277:-1 None
F35E2.1 ENSEMBL cdna:known chromosome:CEL140:I:11746848:11748884:-1 gene:F35E2.1 A 
SNAP00000036929 ENSEMBL cdna:SNAP chromosome:CEL140:I:8382862:8385660:1 None
GENEFINDER00000041145 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11746848:11748884:-1 None
NM_059871 NCBI Caenorhabditis elegans F16D3.6 (F16D3.6) mRNA, complete cds. A 
NM_060590 NCBI Caenorhabditis elegans F35E2.1 (F35E2.1) mRNA, complete cds. A 
F16D3.6 ENSEMBL cdna:known chromosome:CEL140:I:8383615:8385660:1 gene:F16D3.6 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041138 3/11 Cross Hyb Matching Probes None
GENEFINDER00000036932 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8383545-8385591(+) 100.0 100.0
chrIV:3388052-3390090(-) 97.88 97.88
chrI:11746778-11748815(-) 94.74 94.74
Public Domain and Genome References
Gene Title


Ensembl F16D3.6
F35E2.1
B0546.5
Entrez Gene 182031 Entrez gene
184571 Entrez gene
185284 Entrez gene
SwissProt O44442 EMBL-EBI
Q19494 EMBL-EBI
O62224 EMBL-EBI
WormBase CE34640 Wormbase
CE36133 Wormbase
CE17771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01498 Hypothetical protein F16D3.6 [Caenorhabditis elegans] ref|NP_492272.2| F16D3.6 [Caenorhabditis elegans] 0.0
blast CAB04282 Hypothetical protein F35E2.1 [Caenorhabditis elegans] ref|NP_492991.1| F35E2.1 [Caenorhabditis elegans] 0.0
blast CAB04282 Hypothetical protein F35E2.1 [Caenorhabditis elegans] ref|NP_492991.1| F35E2.1 [Caenorhabditis elegans] 1.0E-178
blast CAB01498 Hypothetical protein F16D3.6 [Caenorhabditis elegans] ref|NP_492272.2| F16D3.6 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 1.0E-126
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 2.0E-45
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 1.0E-126
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 1.0E-126
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 9.3E-65
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 6.1E-61
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 1.2E-19
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 2.4E-42
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 6.4E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492272.2 7 44-66,79-101,111-133,154-176,196-218,239-261,271-293
NP_500337.2 4 44-66,79-101,155-177,198-220
NP_492991.1 7 44-66,79-101,111-133,154-176,200-222,243-265,275-297
F16D3.6 7 44-66,79-101,111-133,154-176,196-218,239-261,271-293
F35E2.1 7 44-66,79-101,111-133,154-176,200-222,243-265,275-297
B0546.5 4 44-66,79-101,155-177,198-220
GENEFINDER00000041145 7 44-66,79-101,111-133,154-176,200-222,243-265,275-297
SNAP00000036929 4 72-91,119-141,162-184,199-221
SNAP00000001412 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:172162_X_AT
tcatgatactctaaacccgaacctaatctctataatattgcctagatccattatttacgc
gtttctcaattatccatttggagaaaacaataagaatgatgtgtgttatacacttcgatt
cagtaatggaatggaacttgttcggatcttctcaacgttatttttcaattttgcagccat
cattgtcaattttgtaattcttcgatttgtgaaacactttgaaaatatccaatcaaaaag
aattcaattaactcaaagtcttctcattcaatcagtaataccagtcattgtatctttgcc
tttattacttttatcatttgagttctattttggaatcccaatgccaagctcatttggatc
cacatggtatgctctaacattccttgggccatttctcatgccactctcgtcaattctcgg
aattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGATACTCTAAACCCGAACCTA 49 623 525 Antisense
TAAACCCGAACCTAATCTCTATAAT 308 639 536 Antisense
TGCCTAGATCCATTATTTACGCGTT 632 583 563 Antisense
TTTACGCGTTTCTCAATTATCCATT 547 671 578 Antisense
GAACTTGTTCGGATCTTCTCAACGT 182 349 658 Antisense
ACTCAAAGTCTTCTCATTCAATCAG 154 99 775 Antisense
ACCAGTCATTGTATCTTTGCCTTTA 84 87 804 Antisense
TGGAATCCCAATGCCAAGCTCATTT 576 545 855 Antisense
GGATCCACATGGTATGCTCTAACAT 65 513 880 Antisense
TAACATTCCTTGGGCCATTTCTCAT 402 639 899 Antisense
CACTCTCGTCAATTCTCGGAATTCG 193 197 926 Antisense
Sequence Source Affymetrix Proprietary Database