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[172161_x_at]

Description F37D6.4 /REP_DB=WormBase Gene ID /WP=CE05821 /TR=Q20132 /GB=CAA99850.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 14.2
(-2.9)
A 		28.6
(-0.5)
A 		13.8
(-3)
A 		48.7
(3)
P 		35
B 8.8
(-2.1)
A 		11.9
(-1.7)
A 		2.9
(-3)
A 		43.7
(3)
P 		41
C 23.9
(-0.8)
A 		7.9
(-3)
A 		14.7
(-2.1)
A 		52.1
(3)
P 		44
avr 15.6
(-2.2) 		16.1
(-2.1) 		10.5
(-3) 		48.2
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 24.9
(0.2)
A 		12.3
(-3)
A 		14
(-2.6)
A 		36.1
(3)
A 		13.2
(-2.8)
A 		27.3
(0.8)
P 		24
B 12.5
(1.9)
A 		1.5
(-3)
A 		11.9
(1.6)
A 		15
(3)
A 		10
(0.8)
A 		10.5
(1)
A 		14
C 1.9
(-2.8)
A 		41.1
(3)
P 		13.9
(-1)
A 		5.1
(-2.3)
A 		0.6
(-3)
A 		10.8
(-1.5)
P 		41
avr 13.1
(-0.1) 		18.3
(2.8) 		13.3
(0) 		18.7
(3) 		7.9
(-3) 		16.2
(1.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.2
(-0.3)
A 		6.2
(1.5)
A 		3.6
(-3)
A 		7.1
(3)
P 		4
B 2.8
(-1.5)
A 		2.9
(-1.5)
A 		0.7
(-3)
A 		9.3
(3)
P 		9
C 7.9
(2.2)
A 		2.3
(-3)
A 		5.1
(-0.4)
A 		8.8
(3)
P 		7
avr 5.3
(-0.5) 		3.8
(-2.2) 		3.1
(-3) 		8.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.6
(-1.5)
A 		4.4
(-1.7)
A 		3.1
(-3)
A 		9.2
(3)
A 		4
(-2.1)
A 		6.7
(0.5)
P 		6
B 4.3
(3)
A 		0.5
(-3)
A 		2.9
(0.8)
A 		4
(2.5)
A 		4
(2.5)
A 		3.9
(2.4)
A 		4
C 0.7
(-2.8)
A 		12.5
(3)
P 		3.5
(-1.4)
A 		1
(-2.6)
A 		0.2
(-3)
A 		3.6
(-1.3)
P 		12
avr 3.2
(-2) 		5.8
(3) 		3.2
(-2) 		4.7
(0.9) 		2.7
(-3) 		4.7
(0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172161_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.683
Sequence Type Exemplar sequence
Representative Public ID F37D6.4 NCBI
Target Description F37D6.4 /REP_DB=WormBase Gene ID /WP=CE05821 /TR=Q20132 /GB=CAA99850.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060344 NCBI Caenorhabditis elegans F37D6.4 (F37D6.4) mRNA, complete cds. 11/11 None
F37D6.4 ENSEMBL cdna:known chromosome:CEL140:I:10496771:10497112:1 gene:F37D6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060333 1/11 Cross Hyb Matching Probes A 
NM_060334 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000001719 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001713 1/11 Cross Hyb Matching Probes None
Y106G6H.9 1/11 Cross Hyb Matching Probes A 
Y106G6H.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10496701-10497043(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37D6.4
Entrez Gene 185426 Entrez gene
SwissProt Q20132 EMBL-EBI
WormBase CE05821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99850 Hypothetical protein F37D6.4 [Caenorhabditis elegans] ref|NP_492745.1| F37D6.4 [Caenorhabditis elegans] 8.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.4E-5
Sequence
Target Sequence 
>C. ELEGANS:172161_X_AT
tggaaaacgtcaccaattttcctctacttcaacttccttccaagactattcaagttgtgc
tgagtattatgagtccatttgaactaatcaatttctcaaagtcgagtgcggaagcaaaga
aagtagttaaacagttcgcaaatgctaaaaggagggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAAACGTCACCAATTTTCCTCT 106 545 14 Antisense
TACTTCAACTTCCTTCCAAGACTAT 321 641 38 Antisense
CAACTTCCTTCCAAGACTATTCAAG 270 189 43 Antisense
AAGACTATTCAAGTTGTGCTGAGTA 574 153 55 Antisense
TGTGCTGAGTATTATGAGTCCATTT 267 557 69 Antisense
GAGTATTATGAGTCCATTTGAACTA 293 397 75 Antisense
GTCCATTTGAACTAATCAATTTCTC 492 477 86 Antisense
ATTTCTCAAAGTCGAGTGCGGAAGC 280 17 104 Antisense
AGTGCGGAAGCAAAGAAAGTAGTTA 475 57 118 Antisense
GTAGTTAAACAGTTCGCAAATGCTA 211 455 136 Antisense
GTTCGCAAATGCTAAAAGGAGGGAA 286 433 147 Antisense
Sequence Source Affymetrix Proprietary Database