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[172160_x_at]

Description F57G4.3 /REP_DB=WormBase Gene ID /WP=CE18768 /TR=Q9XUX4 /GB=CAB04508.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 79      6grp_total > 78      4grp_total > 01      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 45.7
(-2.4)
A 		27.1
(-3)
A 		76.4
(-1.5)
A 		227.6
(3)
P 		201
B 72.3
(-3)
A 		82.2
(-0.8)
A 		93.9
(1.9)
A 		98.9
(3)
P 		27
C 75.8
(-2.6)
P 		76
(-2.6)
A 		60.7
(-3)
A 		269.7
(3)
P 		209
avr 64.6
(-2.9) 		61.8
(-3) 		77
(-2.3) 		198.7
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 97.9
(-1.2)
P 		118.7
(-0.2)
P 		59.6
(-3)
P 		70.2
(-2.5)
P 		150
(1.3)
P 		185.8
(3)
P 		126
B 98.2
(-2)
P 		84.1
(-3)
P 		103.5
(-1.6)
P 		98.5
(-1.9)
A 		137.1
(0.9)
P 		165.1
(3)
P 		81
C 43.4
(-3)
A 		105.8
(-0)
P 		103.7
(-0.1)
P 		99.6
(-0.3)
M 		65.7
(-1.9)
M 		169.8
(3)
P 		126
avr 79.8
(-3) 		102.9
(-1.5) 		88.9
(-2.4) 		89.4
(-2.4) 		117.6
(-0.6) 		173.6
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 16.6
(-0.7)
A 		5.9
(-3)
A 		20
(0.1)
A 		33.3
(3)
P 		27
B 23.1
(3)
A 		20.3
(-3)
A 		21.8
(0.2)
A 		21.1
(-1.3)
P 		3
C 25.1
(-2)
P 		21.9
(-2.8)
A 		21.2
(-3)
A 		45.5
(3)
P 		24
avr 21.6
(-1.1) 		16
(-3) 		21
(-1.3) 		33.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 18
(-2.1)
P 		42.2
(2.4)
P 		13
(-3)
P 		17.8
(-2.1)
P 		45.3
(3)
P 		45.2
(3)
P 		32
B 34.2
(-1.5)
P 		28
(-2.5)
P 		25.1
(-3)
P 		26.1
(-2.8)
A 		55.7
(2)
P 		61.6
(3)
P 		37
C 16.1
(-3)
A 		32.3
(-0.6)
P 		26.4
(-1.5)
P 		20
(-2.4)
M 		21.3
(-2.2)
M 		56.8
(3)
P 		41
avr 22.8
(-2.7) 		34.2
(-0.7) 		21.5
(-3) 		21.3
(-3) 		40.8
(0.5) 		54.5
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172160_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12940
Sequence Type Exemplar sequence
Representative Public ID F57G4.3 NCBI
Target Description F57G4.3 /REP_DB=WormBase Gene ID /WP=CE18768 /TR=Q9XUX4 /GB=CAB04508.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075057 NCBI Caenorhabditis elegans F57G4.3 (F57G4.3) mRNA, complete cds. 11/11 None
SNAP00000009855 ENSEMBL cdna:SNAP chromosome:CEL140:V:17634371:17635242:-1 11/11 None
GENEFINDER00000009867 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17634371:17636284:-1 11/11 None
F57G4.3 ENSEMBL cdna:known chromosome:CEL140:V:17634124:17635344:-1 gene:F57G4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074115 7/11 Cross Hyb Matching Probes A 
NM_067919 7/11 Cross Hyb Matching Probes A 
NM_061031 6/11 Cross Hyb Matching Probes A 
SNAP00000038367 6/11 Cross Hyb Matching Probes None
GENEFINDER00000038392 6/11 Cross Hyb Matching Probes None
SNAP00000034693 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034695 7/11 Cross Hyb Matching Probes None
SNAP00000036503 7/11 Cross Hyb Matching Probes None
GENEFINDER00000036619 6/11 Cross Hyb Matching Probes None
SNAP00000032387 7/11 Cross Hyb Matching Probes None
GENEFINDER00000032394 7/11 Cross Hyb Matching Probes None
Y71A12B.7 6/11 Cross Hyb Matching Probes A 
Y55H10B.1 7/11 Cross Hyb Matching Probes A 
T16A9.1 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F57G4.3
Entrez Gene 186458 Entrez gene
SwissProt Q9XUX4 EMBL-EBI
WormBase CE18768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast CAB04508 Hypothetical protein F57G4.3 [Caenorhabditis elegans] ref|NP_507458.1| F57G4.3 [Caenorhabditis elegans] 1.0E-158
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 1.0E-143
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 1.0E-125
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:172160_X_AT
aacggccaagacgattccgctgactcaagaactacactcaccgagagcgaaaacgaagtg
aattttgacaatgaaaccactttgctgttctcgcctcaaagcacattcacgcctattttt
tcgtcaacgcgcctcgaagagaggcaacttgtggaaagggagctcaaggacaaccatgcc
gaagagattcaactcgacgctgacaaggccaacgagagccagctcaacgacagtcgaagg
tcggctagaaatcgtaccagttcaacaattttcgacccgtcgccaactcaaccaaacgat
gatttcgaaatgtctccgagccatagactattgcgttttgacgaaatcattgatctgtgg
gatatcgaactgtacaccaatacgactgagagcctcaccttccgggccacactgggaact
gagaacaattattctgtcagacctgataccggaactgtgttgaaaaaccgcatattgaaa
attcggctcctcaacgatgatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGCCAAGACGATTCCGCTGACT 233 143 298 Antisense
GCTGACTCAAGAACTACACTCACCG 636 295 316 Antisense
AATGAAACCACTTTGCTGTTCTCGC 345 165 367 Antisense
AAAGCACATTCACGCCTATTTTTTC 568 123 395 Antisense
TTTTCGTCAACGCGCCTCGAAGAGA 446 667 415 Antisense
GAGCTCAAGGACAACCATGCCGAAG 165 389 457 Antisense
AACTCGACGCTGACAAGGCCAACGA 183 139 488 Antisense
GAGCCAGCTCAACGACAGTCGAAGG 324 385 513 Antisense
CAGTTCAACAATTTTCGACCCGTCG 449 205 555 Antisense
ACACCAATACGACTGAGAGCCTCAC 379 109 671 Antisense
AATTCGGCTCCTCAACGATGATGCT 239 175 777 Antisense
Sequence Source Affymetrix Proprietary Database