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[172159_x_at]

Description F41E7.4 /REP_DB=WormBase Gene ID /WP=CE03304 /TR=Q20276 /GB=CAA92127.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_high_8_8 > 61      6grp_highest_nonorm > 21      6grp_total > 06      4grp_total > 59      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 925
1 2 3 4 range
A 678.2
(-0)
P 		879.4
(1.3)
P 		1135.7
(3)
P 		234.2
(-3)
M 		902
B 574.2
(0.4)
P 		806.7
(2.5)
P 		860.1
(3)
P 		210.3
(-3)
A 		650
C 529
(-0.3)
P 		918
(3)
P 		888.6
(2.7)
P 		219.9
(-3)
P 		698
avr 593.8
(0) 		868
(2.2) 		961.5
(3) 		221.5
(-3) 		740

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2890
1 2 3 4 5 6 range
A 2988.1
(3)
P 		1088.9
(-1.1)
P 		1153.6
(-1)
P 		889.6
(-1.5)
P 		557.4
(-2.2)
P 		201.6
(-3)
P 		2787
B 2716
(3)
P 		1560.7
(0.3)
P 		780
(-1.6)
P 		735.3
(-1.7)
P 		681.9
(-1.8)
P 		172.6
(-3)
P 		2543
C 2474.5
(3)
P 		1467.9
(0.5)
P 		733.3
(-1.4)
P 		795.8
(-1.2)
P 		623.1
(-1.7)
P 		97.9
(-3)
P 		2377
avr 2726.2
(3) 		1372.5
(-0.2) 		889
(-1.3) 		806.9
(-1.5) 		620.8
(-1.9) 		157.4
(-3) 		2569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 246.9
(1.9)
P 		190.9
(0.6)
P 		296.9
(3)
P 		34.3
(-3)
M 		263
B 183.1
(2.4)
P 		199.2
(3)
P 		199.3
(3)
P 		44.8
(-3)
A 		155
C 175.1
(0)
P 		263.9
(2)
P 		309.7
(3)
P 		37.1
(-3)
P 		273
avr 201.7
(1.3) 		218
(1.7) 		268.6
(3) 		38.7
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 912
1 2 3 4 5 6 range
A 550.8
(3)
P 		387.3
(1)
P 		251.2
(-0.6)
P 		225.6
(-0.9)
P 		168.2
(-1.6)
P 		49.1
(-3)
P 		502
B 945
(3)
P 		519.5
(0.1)
P 		189.4
(-2.1)
P 		194.8
(-2.1)
P 		277
(-1.6)
P 		64.4
(-3)
P 		881
C 917.2
(3)
P 		447.9
(-0.2)
P 		186.6
(-2)
P 		160
(-2.1)
P 		201.6
(-1.9)
P 		32.8
(-3)
P 		884
avr 804.3
(3) 		451.6
(0.2) 		209.1
(-1.7) 		193.5
(-1.9) 		215.6
(-1.7) 		48.8
(-3) 		756
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172159_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16866
Sequence Type Exemplar sequence
Representative Public ID F41E7.4 NCBI
Target Description F41E7.4 /REP_DB=WormBase Gene ID /WP=CE03304 /TR=Q20276 /GB=CAA92127.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077325 NCBI Caenorhabditis elegans F41E7.4 (F41E7.4) mRNA, complete cds. 11/11 None
SNAP00000016490 ENSEMBL cdna:SNAP chromosome:CEL140:X:10302670:10302998:1 11/11 None
GENEFINDER00000016502 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10302670:10302998:1 11/11 None
F41E7.4 ENSEMBL cdna:known chromosome:CEL140:X:10302579:10303074:1 gene:F41E7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10302669-10302998(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E7.4
Entrez Gene 181237 Entrez gene
SwissProt Q20276 EMBL-EBI
WormBase CE03304 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172159_X_AT
tcctccttgctgttttagctgttgctgctttggccgctccacaaagagttattgagaaga
ctactgttatccgtggagggggtggaggattcggtggtggaggattcggacgtccagcac
cattccgcccaccaccaccaagatttggaccatcattcggtcgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCCTTGCTGTTTTAGCTGTTGC 84 593 32 Antisense
TGTTTTAGCTGTTGCTGCTTTGGCC 543 561 42 Antisense
TGCTTTGGCCGCTCCACAAAGAGTT 551 579 57 Antisense
GGCCGCTCCACAAAGAGTTATTGAG 235 541 63 Antisense
TGAGAAGACTACTGTTATCCGTGGA 415 569 84 Antisense
AAGACTACTGTTATCCGTGGAGGGG 86 147 88 Antisense
ACTGTTATCCGTGGAGGGGGTGGAG 649 93 94 Antisense
GGGTGGAGGATTCGGTGGTGGAGGA 610 497 111 Antisense
GGTGGAGGATTCGGACGTCCAGCAC 158 499 127 Antisense
ACCACCACCAAGATTTGGACCATCA 476 85 162 Antisense
GATTTGGACCATCATTCGGTCGCCC 583 427 173 Antisense
Sequence Source Affymetrix Proprietary Database