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[172158_x_at]

Description Y67D8C.N /REP_DB=WormBase Gene ID /WP=CE22784 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23382.1
Cluster 6grp_total > 62      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 1.6
(-3)
A 		14.3
(3)
A 		6.1
(-0.9)
A 		4.3
(-1.7)
A 		13
B 4.2
(-2.6)
A 		4.4
(-2.5)
A 		3.1
(-3)
A 		18.5
(3)
A 		15
C 5.3
(-2.7)
A 		3.4
(-2.9)
A 		1.3
(-3)
A 		94.7
(3)
A 		93
avr 3.7
(-3) 		7.4
(-2.3) 		3.5
(-3) 		39.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.8
(-2.2)
A 		15.9
(0.7)
A 		24.4
(3)
A 		4.5
(-2.3)
A 		4.7
(-2.2)
A 		1.8
(-3)
A 		23
B 2.6
(-3)
A 		5.8
(3)
A 		5
(1.5)
A 		5.5
(2.4)
A 		2.8
(-2.6)
A 		3.8
(-0.8)
A 		3
C 2.6
(-2.7)
A 		2.6
(-2.7)
A 		4.8
(-2)
A 		19.9
(3)
A 		4
(-2.2)
A 		1.6
(-3)
A 		18
avr 3.3
(-2.4) 		8.1
(0.8) 		11.4
(3) 		10
(2.1) 		3.8
(-2.1) 		2.4
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.6
(-3)
A 		3.1
(3)
A 		1.6
(-0.6)
A 		0.6
(-3)
A 		3
B 1.3
(-1.9)
A 		1.1
(-2.3)
A 		0.7
(-3)
A 		3.9
(3)
A 		3
C 1.8
(-2.5)
A 		1
(-2.8)
A 		0.4
(-3)
A 		16
(3)
A 		16
avr 1.2
(-2.7) 		1.7
(-2.2) 		0.9
(-3) 		6.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.9
(-2.4)
A 		5.7
(3)
A 		5.3
(2.5)
A 		1.2
(-2.1)
A 		1.4
(-1.9)
A 		0.4
(-3)
A 		5
B 0.9
(-3)
A 		1.9
(3)
A 		1.2
(-1.2)
A 		1.5
(0.6)
A 		1.1
(-1.8)
A 		1.4
(-0)
A 		1
C 0.9
(-2.3)
A 		0.8
(-2.5)
A 		1.2
(-1.8)
A 		4
(3)
A 		1.3
(-1.6)
A 		0.5
(-3)
A 		4
avr 0.9
(-2.7) 		2.8
(3) 		2.6
(2.4) 		2.2
(1.2) 		1.3
(-1.5) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172158_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19214
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.N NCBI
Target Description Y67D8C.N /REP_DB=WormBase Gene ID /WP=CE22784 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23382.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067890 NCBI Caenorhabditis elegans Y67D8C.1 (Y67D8C.1) mRNA, complete cds. 11/11 None
Y67D8C.1 ENSEMBL cdna:known chromosome:CEL140:IV:3075133:3075936:1 gene:Y67D8C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3075138-3075942(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.1
Entrez Gene 190517 Entrez gene
SwissProt Q9GUN2 EMBL-EBI
WormBase CE22784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23382 Hypothetical protein Y67D8C.1 [Caenorhabditis elegans] ref|NP_500291.1| Y67D8C.1 [Caenorhabditis elegans] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:172158_X_AT
atgtccaaagccaatgacgtcattgaaaatacacatgtcaccactccaatcatcgaccaa
atcaaggacatcgattcaaaaaataaaaagaatatccaaacagttcgagagaagaatgag
ccaaaatgttccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCAAAGCCAATGACGTCATTG 128 47 13 Antisense
AATGACGTCATTGAAAATACACATG 375 165 25 Antisense
GAAAATACACATGTCACCACTCCAA 600 353 37 Antisense
AAAATACACATGTCACCACTCCAAT 367 133 38 Antisense
CCACTCCAATCATCGACCAAATCAA 460 271 53 Antisense
ACTCCAATCATCGACCAAATCAAGG 618 97 55 Antisense
AATCATCGACCAAATCAAGGACATC 50 171 60 Antisense
GACCAAATCAAGGACATCGATTCAA 44 383 67 Antisense
AAGAATATCCAAACAGTTCGAGAGA 595 151 100 Antisense
ATATCCAAACAGTTCGAGAGAAGAA 21 21 104 Antisense
AAGAATGAGCCAAAATGTTCCAAAA 149 153 124 Antisense
Sequence Source Affymetrix Proprietary Database