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[172157_x_at]

Description Y67D8C.M /REP_DB=WormBase Gene ID /WP=CE22783 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23381.1
Cluster 6grp_total > 08      4grp_total > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 31.6
(-2.5)
A 		14.4
(-3)
A 		74.7
(-1.1)
A 		203.4
(3)
P 		189
B 71.2
(2.9)
A 		71.4
(3)
A 		57.7
(-3)
A 		60
(-2)
A 		14
C 27
(-3)
A 		52.3
(-2)
A 		37.3
(-2.6)
A 		179.3
(3)
P 		152
avr 43.3
(-3) 		46
(-2.8) 		56.6
(-2.2) 		147.6
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 95.2
(3)
A 		4.5
(-3)
A 		37
(-0.9)
A 		10.7
(-2.6)
A 		30.5
(-1.3)
A 		49.4
(-0)
A 		91
B 37
(-0.2)
A 		43.4
(0.7)
A 		48.8
(1.5)
A 		59.4
(3)
A 		23.2
(-2.2)
A 		17.8
(-3)
A 		42
C 25.4
(-1.6)
A 		44.5
(0.1)
A 		33.1
(-0.9)
A 		76.5
(3)
A 		9.2
(-3)
A 		45
(0.2)
A 		67
avr 52.5
(3) 		30.8
(-1.1) 		39.6
(0.5) 		48.9
(2.3) 		21
(-3) 		37.4
(0.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 11.5
(-1.1)
A 		3.1
(-3)
A 		19.5
(0.7)
A 		29.8
(3)
P 		27
B 22.7
(3)
A 		17.6
(-0.1)
A 		13.4
(-2.6)
A 		12.8
(-3)
A 		10
C 8.9
(-3)
A 		15
(-1.3)
A 		13
(-1.8)
A 		30.2
(3)
P 		21
avr 14.4
(-1.8) 		11.9
(-3) 		15.3
(-1.4) 		24.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.6
(3)
A 		1.6
(-3)
A 		8.1
(-0.6)
A 		2.7
(-2.6)
A 		9.2
(-0.2)
A 		12
(0.9)
A 		16
B 12.9
(1.2)
A 		14.5
(2.2)
A 		11.8
(0.4)
A 		15.7
(3)
A 		9.4
(-1.2)
A 		6.6
(-3)
A 		9
C 9.4
(0.1)
A 		13.6
(2.1)
A 		8.4
(-0.4)
A 		15.4
(3)
A 		3
(-3)
A 		15.1
(2.9)
A 		12
avr 13.3
(3) 		9.9
(-0.3) 		9.4
(-0.8) 		11.3
(1) 		7.2
(-3) 		11.2
(0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172157_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19277
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.M NCBI
Target Description Y67D8C.M /REP_DB=WormBase Gene ID /WP=CE22783 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23381.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067889 NCBI Caenorhabditis elegans Y67D8C.2 (Y67D8C.2) mRNA, complete cds. 11/11 None
SNAP00000001616 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3072293:3073912:1 11/11 None
GENEFINDER00000001632 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3072293:3073912:1 11/11 None
Y67D8C.2 ENSEMBL cdna:known chromosome:CEL140:IV:3072482:3073912:1 gene:Y67D8C.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074998 3/11 Cross Hyb Matching Probes A 
NM_075180 1/11 Cross Hyb Matching Probes A 
NM_075916 4/11 Cross Hyb Matching Probes A 
NM_076519 2/11 Cross Hyb Matching Probes A 
SNAP00000029066 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029070 3/11 Cross Hyb Matching Probes None
SNAP00000039472 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039486 1/11 Cross Hyb Matching Probes None
SNAP00000029103 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029109 2/11 Cross Hyb Matching Probes None
SNAP00000009970 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009990 4/11 Cross Hyb Matching Probes None
Y20C6A.3 3/11 Cross Hyb Matching Probes A 
Y51A2A.5 1/11 Cross Hyb Matching Probes A 
F07G6.3 4/11 Cross Hyb Matching Probes A 
C03F11.4.1 2/11 Cross Hyb Matching Probes A 
C03F11.4.2 2/11 Cross Hyb Matching Probes A 
C03F11.4.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3072487-3073918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.2
Entrez Gene 190518 Entrez gene
SwissProt Q9GUN4 EMBL-EBI
WormBase CE22783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23381 Hypothetical protein Y67D8C.2 [Caenorhabditis elegans] ref|NP_500290.1| Y67D8C.2 [Caenorhabditis elegans] 0.0
blast CAA16304 Hypothetical protein Y20C6A.3 [Caenorhabditis elegans] ref|NP_507399.1| Y20C6A.3 [Caenorhabditis elegans] 1.0E-132
blast CAA16304 Hypothetical protein Y20C6A.3 [Caenorhabditis elegans] ref|NP_507399.1| Y20C6A.3 [Caenorhabditis elegans] 1.0E-130
blast NP_508317 F07G6.3 [Caenorhabditis elegans] gb|AAA96074.1| Hypothetical protein F07G6.3 [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:172157_X_AT
gagcacactatgcacaactcattgaacaatcagatacaaaaggccggactacaaaagccg
ggagatgtcgcctgtggcggattttttgacaagaaaatgaagcgtagagtcaatgaggaa
atgcgtccgcgtacagatccaccaactgacttgtcacaacaagcatgttatggtacagta
tctgatatattggattggaacaattggagtcatgacaattggaaggatatgagttggcaa
agattcgttcgagaatcgcgtcctcgcaaggatccaccttggagttcgtgccgttcggaa
gctgacatgtgttatggatggagatgggatgtcagtcaagttccatcttgctctcaggat
tggagaagtcgtcacgtcttgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACACTATGCACAACTCATTGA 27 391 982 Antisense
CAAAAGCCGGGAGATGTCGCCTGTG 169 189 1033 Antisense
TCGCCTGTGGCGGATTTTTTGACAA 428 599 1049 Antisense
GAAATGCGTCCGCGTACAGATCCAC 280 361 1099 Antisense
ACAGATCCACCAACTGACTTGTCAC 398 107 1114 Antisense
TTCGTTCGAGAATCGCGTCCTCGCA 380 693 1225 Antisense
AAGGATCCACCTTGGAGTTCGTGCC 184 159 1249 Antisense
GAGTTCGTGCCGTTCGGAAGCTGAC 590 397 1263 Antisense
GCCGTTCGGAAGCTGACATGTGTTA 42 285 1271 Antisense
GTCAGTCAAGTTCCATCTTGCTCTC 204 467 1312 Antisense
TTGGAGAAGTCGTCACGTCTTGTTC 440 709 1341 Antisense
Sequence Source Affymetrix Proprietary Database