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[172156_x_at]

Description Y71A12B.P /REP_DB=WormBase Gene ID /WP=CE24596 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB82000.1
Cluster 6grp_high1_10_10 > 98      6grp_total > 98      4grp_total > 03      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 85.4
(-3)
P 		96.3
(-2)
A 		91.2
(-2.5)
M 		148.8
(3)
A 		63
B 121.4
(-0.2)
P 		88.9
(-3)
M 		101
(-2)
A 		158.4
(3)
P 		70
C 112.2
(-2.7)
M 		109.6
(-3)
M 		110.8
(-2.8)
M 		155.2
(3)
P 		46
avr 106.3
(-2.1) 		98.3
(-3) 		101
(-2.7) 		154.1
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 814
1 2 3 4 5 6 range
A 69.7
(-3)
A 		151.9
(-2.3)
A 		133.4
(-2.4)
P 		316.8
(-0.7)
P 		613.7
(2)
P 		727.3
(3)
P 		658
B 122
(-2.7)
P 		92.4
(-3)
P 		99.1
(-2.9)
P 		258.3
(-1.1)
P 		614.6
(3)
P 		565.5
(2.4)
P 		522
C 90.6
(-3)
M 		106.8
(-2.9)
P 		104.6
(-2.9)
M 		214.8
(-2.1)
P 		567.6
(0.6)
P 		883.8
(3)
P 		793
avr 94.1
(-3) 		117
(-2.8) 		112.4
(-2.8) 		263.3
(-1.4) 		598.6
(1.8) 		725.5
(3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 31.1
(3)
P 		20.9
(-3)
A 		23.9
(-1.2)
M 		21.8
(-2.5)
A 		10
B 38.7
(3)
P 		22
(-3)
M 		23.4
(-2.5)
A 		33.7
(1.2)
P 		17
C 37.1
(2.3)
M 		31.5
(-0.4)
M 		38.6
(3)
M 		26.2
(-3)
P 		12
avr 35.6
(3) 		24.8
(-3) 		28.6
(-0.9) 		27.2
(-1.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 12.9
(-3)
A 		54
(-1.6)
A 		29.1
(-2.4)
P 		80.3
(-0.7)
P 		185.2
(3)
P 		177.1
(2.7)
P 		172
B 42.4
(-2.5)
P 		30.8
(-2.8)
P 		24.1
(-3)
P 		68.4
(-1.8)
P 		249.7
(3)
P 		210.9
(2)
P 		226
C 33.6
(-2.8)
M 		32.6
(-2.9)
P 		26.6
(-3)
M 		43.2
(-2.6)
P 		183.7
(0.5)
P 		295.9
(3)
P 		269
avr 29.6
(-2.9) 		39.1
(-2.6) 		26.6
(-3) 		64
(-1.9) 		206.2
(2.4) 		228
(3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172156_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18772
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.P NCBI
Target Description Y71A12B.P /REP_DB=WormBase Gene ID /WP=CE24596 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB82000.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028330(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028330 NCBI Caenorhabditis elegans Y54G2A.36 (Y54G2A.36) mRNA, complete cds. 9/11 None
SNAP00000038377 ENSEMBL cdna:SNAP chromosome:CEL140:I:13980735:13981508:-1 11/11 None
GENEFINDER00000038390 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13980735:13981127:-1 11/11 None
Y54G2A.36 ENSEMBL cdna:known chromosome:CEL140:IV:2901176:2901626:1 gene:Y54G2A.36 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059646 1/11 Cross Hyb Matching Probes A 
SNAP00000036113 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036126 1/11 Cross Hyb Matching Probes None
SNAP00000036502 8/11 Cross Hyb Matching Probes None
GENEFINDER00000036617 8/11 Cross Hyb Matching Probes None
R06C7.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7253606-7254071(+) 91.04 91.04
chrIV:2901180-2901576(+) 98.92 98.92
chrI:13980665-13981058(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.36
Entrez Gene 3565378 Entrez gene
SwissProt Q7Z073 EMBL-EBI
WormBase CE34417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68916 Hypothetical protein Y54G2A.36 [Caenorhabditis elegans] ref|NP_001023501.1| Y54G2A.36 [Caenorhabditis elegans] 2.0E-73
blast CAA95840 Hypothetical protein R06C7.4 [Caenorhabditis elegans] ref|NP_492047.1| R06C7.4 [Caenorhabditis elegans] 8.0E-40
blast CAA95840 Hypothetical protein R06C7.4 [Caenorhabditis elegans] ref|NP_492047.1| R06C7.4 [Caenorhabditis elegans] 2.0E-30
blast CAE74235 Hypothetical protein CBG21920 [Caenorhabditis briggsae] 2.0E-29
blast CAE74235 Hypothetical protein CBG21920 [Caenorhabditis briggsae] 1.0E-26
blast CAA95840 Hypothetical protein R06C7.4 [Caenorhabditis elegans] ref|NP_492047.1| R06C7.4 [Caenorhabditis elegans] 3.0E-25
blast CAE74235 Hypothetical protein CBG21920 [Caenorhabditis briggsae] 6.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023501.1 1 104-126
Y54G2A.36 1 104-126
Sequence
Target Sequence 
>C. ELEGANS:172156_X_AT
tctcgaacatcatgcttgccaactctcggatggttctcgacagtgctcgtctttcactca
atgagactgaaaccgaaaccggaacatctgctctctgccatggagattctgaatgtggaa
atgccaagaggacagtgcttgcggaggattcaacagatgtctacaccaagaacaatctca
ctctgaccgaagccctcacttcattctgcaatggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGAACATCATGCTTGCCAACTC 661 609 17 Antisense
TTGCCAACTCTCGGATGGTTCTCGA 585 701 32 Antisense
TCGGATGGTTCTCGACAGTGCTCGT 199 607 42 Antisense
AGTGCTCGTCTTTCACTCAATGAGA 116 61 58 Antisense
GAAACCGAAACCGGAACATCTGCTC 89 357 85 Antisense
ACATCTGCTCTCTGCCATGGAGATT 159 107 100 Antisense
GGAGATTCTGAATGTGGAAATGCCA 176 519 118 Antisense
GAGGACAGTGCTTGCGGAGGATTCA 285 405 144 Antisense
GAGGATTCAACAGATGTCTACACCA 537 403 160 Antisense
CCAAGAACAATCTCACTCTGACCGA 389 277 182 Antisense
CCCTCACTTCATTCTGCAATGGAGC 398 257 209 Antisense
Sequence Source Affymetrix Proprietary Database