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[172155_x_at]

Description Y71A12B.Q /REP_DB=WormBase Gene ID /WP=CE24597 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB82001.1
Cluster 6grp_total > 39      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 72.4
(-3)
A 		124.3
(-0.2)
A 		95.3
(-1.7)
A 		181.9
(3)
P 		110
B 44.1
(-3)
A 		115.7
(3)
A 		66.6
(-1.1)
A 		88.2
(0.7)
A 		72
C 121.6
(-0.3)
A 		133.7
(0.3)
A 		72.8
(-3)
A 		182.5
(3)
A 		110
avr 79.4
(-2.9) 		124.6
(0.8) 		78.2
(-3) 		150.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 32.3
(-3)
A 		58.2
(-0.3)
A 		40.6
(-2.1)
A 		89.6
(3)
A 		34.2
(-2.8)
A 		41.9
(-2)
A 		57
B 70
(3)
A 		53.2
(1.4)
A 		52.4
(1.4)
A 		5.8
(-3)
A 		68.5
(2.9)
A 		61
(2.2)
A 		64
C 61.1
(1.5)
A 		72.4
(2.6)
A 		46.5
(0.1)
A 		14.8
(-3)
A 		76.5
(3)
A 		63.5
(1.7)
A 		62
avr 54.5
(1.3) 		61.3
(3) 		46.5
(-0.6) 		36.7
(-3) 		59.7
(2.6) 		55.5
(1.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.4
(1.3)
A 		27
(3)
A 		24.9
(-3)
A 		26.6
(1.9)
P 		2
B 14.1
(-3)
A 		28.6
(3)
A 		15.4
(-2.5)
A 		18.8
(-1.1)
A 		15
C 40.3
(3)
A 		38.4
(2.2)
A 		25.4
(-3)
A 		30.8
(-0.8)
A 		15
avr 26.9
(0.2) 		31.3
(3) 		21.9
(-3) 		25.4
(-0.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.9
(-3)
A 		20.7
(2.3)
A 		8.8
(-2)
A 		22.7
(3)
A 		10.3
(-1.4)
A 		10.2
(-1.5)
A 		17
B 24.4
(2.2)
A 		17.7
(0.7)
A 		12.7
(-0.4)
A 		1.5
(-3)
A 		27.8
(3)
A 		22.8
(1.9)
A 		26
C 22.7
(2.4)
A 		22.1
(2.3)
A 		11.8
(-0.6)
A 		3
(-3)
A 		24.8
(3)
A 		21.2
(2)
A 		22
avr 17.7
(1.3) 		20.2
(2.6) 		11.1
(-2) 		9.1
(-3) 		21
(3) 		18.1
(1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172155_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18775
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.Q NCBI
Target Description Y71A12B.Q /REP_DB=WormBase Gene ID /WP=CE24597 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB82001.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061895, NM_060119
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038402 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13985267:13986076:1 11/11 None
SNAP00000038378 ENSEMBL cdna:SNAP chromosome:CEL140:I:13985342:13986076:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060119 5/11 Cross Hyb Matching Probes A 
NM_061895 6/11 Cross Hyb Matching Probes A 
SNAP00000021994 5/11 Cross Hyb Matching Probes None
GENEFINDER00000022004 5/11 Cross Hyb Matching Probes None
SNAP00000019494 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019500 6/11 Cross Hyb Matching Probes None
SNAP00000016607 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016614 6/11 Cross Hyb Matching Probes None
SNAP00000002150 1/11 Cross Hyb Matching Probes None
SNAP00000002151 1/11 Cross Hyb Matching Probes None
SNAP00000024126 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024138 6/11 Cross Hyb Matching Probes None
SNAP00000039412 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039414 7/11 Cross Hyb Matching Probes None
SNAP00000033482 3/11 Cross Hyb Matching Probes None
F30A10.7 5/11 Cross Hyb Matching Probes A 
K02F6.1 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13985197-13986007(+) 67.16 100.0
chrI:9507476-9508149(+) 65.56 81.48
chrII:2555640-2556313(+) 65.68 81.48
chrV:5146806-5147479(-) 65.56 81.48
chrV:5670408-5671081(-) 65.06 80.99
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 1.0E-106
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 1.0E-105
blast AAB66101 Hypothetical protein K02F6.1 [Caenorhabditis elegans] ref|NP_494296.1| K02F6.1 [Caenorhabditis elegans] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:172155_X_AT
aaatttgtcgctcaaggtgtccgtggggaggggatggaagctaatccagttttagtttca
gattcttctgtttttggttttagtgctccagatttgtcagcttgtgattctgttggttct
cgatctgctcgtgaagtgttctcgtcggttgccggcaatgctcggaatgctacttgtgca
aatataactacgattcatgtcacggagagcaagagttcgttgaagaaaagccacagaaga
cgtcgccgtgtggctaagagtcgccaatcatatactgctggaagttcgccaatcaaagaa
acccatctggaccccctgctggaatccgatgttgcgagtgacggcgagcgtttacaaccc
ggcatcctcctgtgtcattctcttcgacagagccacccacgacaagttgtgcgaggatca
gccccaaacactgatcatgcctccactcgccgcagaggtcgagataccgcctctggtggt
gatgcccctagcccaggcataatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTGTCGCTCAAGGTGTCCGTG 558 113 271 Antisense
GCTTGTGATTCTGTTGGTTCTCGAT 505 307 370 Antisense
GGTTCTCGATCTGCTCGTGAAGTGT 402 507 385 Antisense
GGTTGCCGGCAATGCTCGGAATGCT 556 507 417 Antisense
GACGTCGCCGTGTGGCTAAGAGTCG 370 375 509 Antisense
CCCCTGCTGGAATCCGATGTTGCGA 322 261 583 Antisense
GAGTGACGGCGAGCGTTTACAACCC 69 399 606 Antisense
GTGTCATTCTCTTCGACAGAGCCAC 27 487 642 Antisense
ACAAGTTGTGCGAGGATCAGCCCCA 532 113 672 Antisense
CTCCACTCGCCGCAGAGGTCGAGAT 186 237 711 Antisense
GCCCCTAGCCCAGGCATAATTTCTG 461 285 754 Antisense
Sequence Source Affymetrix Proprietary Database