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[172154_x_at]

Description Y48G1BM.H_rc /REP_DB=WormBase Gene ID /WP=CE26119 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 65      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 648
1 2 3 4 range
A 56.6
(-2.7)
A 		49.1
(-2.8)
A 		33.2
(-3)
A 		448.6
(3)
P 		415
B 150.9
(-0.7)
P 		47.4
(-3)
A 		85.2
(-2.2)
A 		323
(3)
P 		276
C 98.3
(-2.2)
P 		36
(-2.8)
A 		15.4
(-3)
A 		663.7
(3)
P 		648
avr 101.9
(-2.2) 		44.2
(-3) 		44.6
(-3) 		478.4
(3) 		434

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 5.9
(-3)
A 		47.2
(-1.7)
A 		198.4
(3)
M 		21.1
(-2.5)
A 		72
(-0.9)
M 		118.8
(0.5)
A 		193
B 80.5
(-0.4)
A 		96.4
(0.8)
P 		47.9
(-3)
M 		74
(-0.9)
A 		66.4
(-1.5)
A 		124
(3)
M 		76
C 16.3
(-3)
A 		81.1
(0.8)
P 		19.6
(-2.8)
A 		95.8
(1.7)
P 		21.1
(-2.7)
A 		117.7
(3)
A 		101
avr 34.2
(-3) 		74.9
(-0.2) 		88.6
(0.8) 		63.6
(-0.9) 		53.2
(-1.7) 		120.2
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 20.6
(-1.7)
A 		10.7
(-2.8)
A 		8.7
(-3)
A 		65.7
(3)
P 		57
B 48.1
(0.8)
P 		11.7
(-3)
A 		19.7
(-2.2)
A 		68.8
(3)
P 		57
C 32.5
(-1.5)
P 		10.3
(-2.7)
A 		5.4
(-3)
A 		111.9
(3)
P 		107
avr 33.7
(-1.1) 		10.9
(-3) 		11.3
(-3) 		82.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 1.1
(-3)
A 		16.8
(-0.8)
A 		43.2
(3)
M 		5.3
(-2.4)
A 		21.7
(-0.1)
M 		28.9
(1)
A 		42
B 28
(-0.2)
A 		32.1
(0.6)
P 		11.6
(-3)
M 		19.6
(-1.6)
A 		27
(-0.3)
A 		46.2
(3)
M 		35
C 6
(-2.8)
A 		24.7
(0.4)
P 		5
(-3)
A 		19.3
(-0.5)
P 		6.8
(-2.7)
A 		39.4
(3)
A 		34
avr 11.7
(-3) 		24.5
(-0.1) 		19.9
(-1.1) 		14.7
(-2.3) 		18.5
(-1.5) 		38.2
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172154_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28180
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.H NCBI
Target Description Y48G1BM.H_rc /REP_DB=WormBase Gene ID /WP=CE26119 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G1BM.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G1BM.H Y48G1BM.H_rc /REP_DB=WormBase Gene ID /WP=CE26119 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075710 1/11 Cross Hyb Matching Probes None
NM_078408 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000021882 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 2/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007905 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 1/11 Cross Hyb Matching Probes None
B0310.4 1/11 Cross Hyb Matching Probes None
C53C11.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172154_X_AT
tcactgagaattatgggcgggcccgtctgccttcgtggtaagacccatcgtggcgagaca
tatcgtggtgatatccttcgtggcgagacccatcgtggtgagacccatcgtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTGAGAATTATGGGCGGGCCCG 300 621 13 Antisense
ACTGAGAATTATGGGCGGGCCCGTC 372 97 15 Antisense
GAGAATTATGGGCGGGCCCGTCTGC 198 391 18 Antisense
TGCCTTCGTGGTAAGACCCATCGTG 382 579 40 Antisense
TCGTGGTAAGACCCATCGTGGCGAG 406 603 45 Antisense
GTAAGACCCATCGTGGCGAGACATA 23 461 50 Antisense
GACCCATCGTGGCGAGACATATCGT 570 381 54 Antisense
ATCGTGGCGAGACATATCGTGGTGA 457 35 59 Antisense
ATCGTGGTGATATCCTTCGTGGCGA 226 35 74 Antisense
TGGTGATATCCTTCGTGGCGAGACC 426 553 78 Antisense
CCATCGTGGTGAGACCCATCGTGGC 121 271 102 Antisense
Sequence Source Affymetrix Proprietary Database