[Home] | [Total List]

[172152_x_at]

Description C32E8.10F /REP_DB=WormBase Gene ID /WP=CE23566 /GEN=unc-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 53      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 206.1
(3)
A 		118.3
(-1.1)
A 		204.1
(2.9)
A 		76.9
(-3)
A 		129
B 171.8
(1.2)
P 		196.2
(3)
A 		144.7
(-0.9)
A 		116
(-3)
A 		80
C 169.7
(0.7)
A 		210
(3)
A 		121.6
(-2.1)
A 		106.3
(-3)
A 		104
avr 182.5
(3) 		174.8
(2.4) 		156.8
(1.1) 		99.7
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 100.9
(1.8)
A 		112.8
(3)
A 		106.9
(2.4)
A 		109.1
(2.6)
A 		51.2
(-3)
A 		88.5
(0.6)
A 		62
B 106.1
(1.5)
A 		124.9
(3)
A 		108.4
(1.7)
A 		97.9
(0.9)
A 		47.8
(-3)
A 		72.9
(-1)
A 		77
C 76.9
(-2.2)
A 		138.3
(1.3)
A 		167.6
(3)
A 		63.5
(-3)
A 		95.4
(-1.2)
A 		74.4
(-2.4)
A 		104
avr 94.6
(-0.2) 		125.3
(2.8) 		127.6
(3) 		90.2
(-0.6) 		64.8
(-3) 		78.6
(-1.7) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 75.1
(3)
A 		25.7
(-1.6)
A 		53.3
(0.9)
A 		11.3
(-3)
A 		64
B 54.8
(3)
P 		48.5
(1.7)
A 		33.5
(-1.2)
A 		24.7
(-3)
A 		30
C 56.2
(2.4)
A 		60.4
(3)
A 		42.4
(0.5)
A 		17.9
(-3)
A 		43
avr 62
(3) 		44.9
(0.7) 		43.1
(0.4) 		18
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.6
(-2.2)
A 		40.1
(3)
A 		23.3
(-1.1)
A 		27.7
(-0)
A 		15.4
(-3)
A 		21.5
(-1.5)
A 		25
B 36.9
(1.7)
A 		41.6
(3)
A 		26.3
(-1.1)
A 		25.9
(-1.2)
A 		19.4
(-3)
A 		27.2
(-0.9)
A 		22
C 28.5
(0.2)
A 		42.2
(2.9)
A 		42.7
(3)
A 		12.8
(-3)
A 		30.9
(0.6)
A 		24.9
(-0.6)
A 		30
avr 28
(-1.1) 		41.3
(3) 		30.8
(-0.2) 		22.1
(-2.9) 		21.9
(-3) 		24.5
(-2.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172152_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.213
Sequence Type Exemplar sequence
Representative Public ID C32E8.10F NCBI
Target Description C32E8.10F /REP_DB=WormBase Gene ID /WP=CE23566 /GEN=unc-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058829(11), NM_058827(11), NM_058826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058829 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058827 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058826 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
SNAP00000040657 ENSEMBL cdna:SNAP chromosome:CEL140:I:3799207:3805706:-1 11/11 None
GENEFINDER00000040668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3799207:3806810:-1 11/11 None
C32E8.10c ENSEMBL cdna:known chromosome:CEL140:I:3798463:3805720:-1 gene:C32E8.10 11/11 A 
C32E8.10f ENSEMBL cdna:known chromosome:CEL140:I:3799126:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10a ENSEMBL cdna:known chromosome:CEL140:I:3799207:3805706:-1 gene:C32E8.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025845 6/11 Cross Hyb Matching Probes None
NM_001025843 6/11 Cross Hyb Matching Probes None
NM_001025844 3/11 Cross Hyb Matching Probes None
NM_058828 5/11 Cross Hyb Matching Probes None
C32E8.10e 3/11 Cross Hyb Matching Probes A 
C32E8.10b 6/11 Cross Hyb Matching Probes A 
C32E8.10h 6/11 Cross Hyb Matching Probes A 
C32E8.10d 5/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171952 7 3 NM_001025843 172028_x_at (10), 172029_x_at (11), 172150_x_at (10), 172151_x_at (10), 176649_s_at (11)
NM_001025845 172028_x_at (11), 172029_x_at (11), 172150_x_at (10), 172151_x_at (10), 176649_s_at (11)
NM_058826 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176649_s_at (11)
NM_058827 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176648_at (11), 176649_s_at (11)
NM_058828 172028_x_at (10), 172029_x_at (9), 172150_x_at (11), 172151_x_at (9), 176649_s_at (11)
NM_058829 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176649_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3799206-3803106(-) 100.0 100.0
Public Domain and Genome References
Ensembl C32E8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68214 Uncoordinated protein 11, isoform c [Caenorhabditis elegans] ref|NP_491228.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
blast T25603 hypothetical protein C32E8.10 - Caenorhabditis elegans 0.0
blast AAK68212 Uncoordinated protein 11, isoform a [Caenorhabditis elegans] ref|NP_491227.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37365.1| AP180-like adaptor protein [Caenorhabditis elegans] sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11 (AP180-like adaptor protein) (Uncoordinated protein 11) 0.0
blast AAK68213 Uncoordinated protein 11, isoform b [Caenorhabditis elegans] ref|NP_001021014.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37367.1| AP180-like adaptor protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Sequence
Target Sequence 
>C. ELEGANS:172152_X_AT
agctcctcaaacggctgatgtgacgaatccatttgggaactttgcagctccaagtgcctt
cccaacgaatgtgccaccaccagcagcacactcggctccatttggagttcaaccagcacc
gcaacattcagctgcaccattctatgcgaaccttcatcaagctcctccaatgcaatcgca
agctccaaatggtcatcaagctgctccattcggatatccaaatgctcatccagatgatct
tgctcgaatgactgcacaaatgtcattgaatcagcagggagcaccggccggctggaatac
cacaacttctgccgtctcaaacaatccgtttggagcaacgtcggctcctcagccaatgta
tacggctccaatgggaatgtatcaacaaccatttggtgctcagccaatgtggaatcctgc
gatggcagcatacggtcaacaatatggatacggacaacctgttccaccacaacagcaaca
ccaaattcaattggttcatgcagcgatggctgcaaagaacgctgcacaagctcaacaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCCTCAAACGGCTGATGTGACG 701 79 36 Antisense
AGCACACTCGGCTCCATTTGGAGTT 138 77 120 Antisense
ATTTGGAGTTCAACCAGCACCGCAA 317 17 135 Antisense
GCAACATTCAGCTGCACCATTCTAT 113 319 156 Antisense
TCTATGCGAACCTTCATCAAGCTCC 458 615 176 Antisense
AGCTCCTCCAATGCAATCGCAAGCT 7 79 195 Antisense
GTCATCAAGCTGCTCCATTCGGATA 384 467 227 Antisense
CGGCTCCTCAGCCAATGTATACGGC 590 241 377 Antisense
CCTGCGATGGCAGCATACGGTCAAC 529 259 451 Antisense
TGGATACGGACAACCTGTTCCACCA 6 551 480 Antisense
AGAACGCTGCACAAGCTCAACAGGC 582 73 551 Antisense
Sequence Source Affymetrix Proprietary Database