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[172149_x_at]

Description C32E8.10A /REP_DB=WormBase Gene ID /WP=CE23562 /GEN=unc-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 31      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 278.6
(3)
P 		209.8
(-3)
A 		231.4
(-1.1)
M 		228.1
(-1.4)
A 		69
B 226.6
(3)
P 		195.8
(-0.3)
M 		170.2
(-3)
M 		222.2
(2.5)
P 		56
C 264.8
(3)
P 		159.1
(-3)
M 		181.1
(-1.8)
M 		224.5
(0.7)
M 		106
avr 256.7
(3) 		188.2
(-3) 		194.2
(-2.5) 		224.9
(0.2) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 182.4
(3)
A 		151.9
(1.3)
M 		126.5
(-0.1)
A 		153.2
(1.4)
A 		74.3
(-3)
A 		157.1
(1.6)
A 		108
B 181.1
(3)
A 		136.8
(-0.5)
A 		153.3
(0.8)
A 		149.8
(0.5)
A 		106
(-3)
A 		137.3
(-0.5)
A 		75
C 152.4
(1.9)
A 		170.3
(3)
A 		107
(-0.9)
A 		101.6
(-1.3)
A 		73.9
(-3)
A 		115.6
(-0.4)
A 		96
avr 172
(3) 		153
(1.7) 		128.9
(0) 		134.9
(0.5) 		84.7
(-3) 		136.7
(0.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 101.4
(3)
P 		45.5
(-1.9)
A 		60.5
(-0.6)
M 		33.4
(-3)
A 		68
B 72.3
(3)
P 		48.4
(-1.4)
M 		39.4
(-3)
M 		47.3
(-1.6)
P 		33
C 87.6
(3)
P 		45.8
(-2)
M 		63.1
(0)
M 		37.9
(-3)
M 		50
avr 87.1
(3) 		46.6
(-2.1) 		54.3
(-1.1) 		39.5
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 33.6
(-0.9)
A 		54
(3)
M 		27.6
(-2)
A 		38.9
(0.1)
A 		22.4
(-3)
A 		38.2
(0)
A 		32
B 63
(3)
A 		45.5
(-1.1)
A 		37.2
(-3)
A 		39.7
(-2.4)
A 		43.1
(-1.6)
A 		51.2
(0.3)
A 		26
C 56.5
(3)
A 		52
(2.3)
A 		27.2
(-1.9)
A 		20.4
(-3)
A 		23.9
(-2.4)
A 		38.7
(0)
A 		36
avr 51
(3) 		50.5
(2.9) 		30.7
(-2.7) 		33
(-2.1) 		29.8
(-3) 		42.7
(0.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172149_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.191
Sequence Type Exemplar sequence
Representative Public ID C32E8.10A NCBI
Target Description C32E8.10A /REP_DB=WormBase Gene ID /WP=CE23562 /GEN=unc-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058829(11), NM_058827(11), NM_058826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058829 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058827 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058826 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
SNAP00000040657 ENSEMBL cdna:SNAP chromosome:CEL140:I:3799207:3805706:-1 11/11 None
GENEFINDER00000040668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3799207:3806810:-1 11/11 None
C32E8.10c ENSEMBL cdna:known chromosome:CEL140:I:3798463:3805720:-1 gene:C32E8.10 11/11 A 
C32E8.10f ENSEMBL cdna:known chromosome:CEL140:I:3799126:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10a ENSEMBL cdna:known chromosome:CEL140:I:3799207:3805706:-1 gene:C32E8.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025845 7/11 Cross Hyb Matching Probes None
NM_001025843 7/11 Cross Hyb Matching Probes None
NM_001025844 2/11 Cross Hyb Matching Probes None
NM_058828 6/11 Cross Hyb Matching Probes None
C32E8.10e 2/11 Cross Hyb Matching Probes A 
C32E8.10b 7/11 Cross Hyb Matching Probes A 
C32E8.10h 7/11 Cross Hyb Matching Probes A 
C32E8.10d 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171952 7 3 NM_001025843 172028_x_at (10), 172029_x_at (11), 172150_x_at (10), 172151_x_at (10), 176649_s_at (11)
NM_001025845 172028_x_at (11), 172029_x_at (11), 172150_x_at (10), 172151_x_at (10), 176649_s_at (11)
NM_058826 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176649_s_at (11)
NM_058827 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176648_at (11), 176649_s_at (11)
NM_058828 172028_x_at (10), 172029_x_at (9), 172150_x_at (11), 172151_x_at (9), 176649_s_at (11)
NM_058829 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176649_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3799206-3805706(-) 100.0 100.0
Public Domain and Genome References
Ensembl C32E8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68214 Uncoordinated protein 11, isoform c [Caenorhabditis elegans] ref|NP_491228.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
blast T25603 hypothetical protein C32E8.10 - Caenorhabditis elegans 0.0
blast AAK68212 Uncoordinated protein 11, isoform a [Caenorhabditis elegans] ref|NP_491227.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37365.1| AP180-like adaptor protein [Caenorhabditis elegans] sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11 (AP180-like adaptor protein) (Uncoordinated protein 11) 0.0
blast AAK68213 Uncoordinated protein 11, isoform b [Caenorhabditis elegans] ref|NP_001021014.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37367.1| AP180-like adaptor protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Sequence
Target Sequence 
>C. ELEGANS:172149_X_AT
tacatcagctgctcagccggatcttttggatatgttccaatcatcggcagctccagctcc
tcaaacggctgatgtgacgaatccatttgggaactttgcagctccaagtgccttcccaac
gaatgtgccaccaccagcagcacactcggctccatttggagttcaaccagcaccgcaaca
ttcagctgcaccattctatgcgaaccttcatcaagctcctccaatgcaatcgcaagctcc
aaatggtcatcaagctgctccattcggatatccaaatgctcatccagatgatcttgctcg
aatgactgcacaaatgtcattgaatcagcagggagcaccggccggctggaataccacaac
ttctgccgtctcaaacaatccgtttggagcaacgtcggctcctcagccaatgtatacggc
tccaatgggaatgtatcaacaaccatttggtgctcagccaatgtggaatcctgcgatggc
agcatacggtcaacaatatggatacggacaacctgttccaccacaacagcaacaccaaat
tcaattggttcatgcagcgatggctgcaaagaacgctgcacaagctcaacaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATCAGCTGCTCAGCCGGATCTT 635 643 1146 Antisense
GATATGTTCCAATCATCGGCAGCTC 504 425 1174 Antisense
AGCTCCTCAAACGGCTGATGTGACG 703 79 1200 Antisense
AGCACACTCGGCTCCATTTGGAGTT 139 77 1284 Antisense
GCAACATTCAGCTGCACCATTCTAT 114 319 1320 Antisense
TCTATGCGAACCTTCATCAAGCTCC 459 615 1340 Antisense
AGCTCCTCCAATGCAATCGCAAGCT 8 79 1359 Antisense
GTCATCAAGCTGCTCCATTCGGATA 387 467 1391 Antisense
CGGCTCCTCAGCCAATGTATACGGC 593 241 1541 Antisense
TGGATACGGACAACCTGTTCCACCA 9 551 1644 Antisense
AGAACGCTGCACAAGCTCAACAGGC 585 73 1715 Antisense
Sequence Source Affymetrix Proprietary Database