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[172145_x_at]

Description Y66A7A.3 /REP_DB=WormBase Gene ID /WP=CE20342 /GB=CAC35864.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 1
(-3)
A 		3.3
(-2.6)
A 		2.1
(-2.8)
A 		38.9
(3)
A 		38
B 16.1
(3)
A 		1
(-3)
A 		4.2
(-1.7)
A 		0.9
(-3)
A 		15
C 1.6
(-3)
A 		2.7
(-2.8)
A 		2
(-2.9)
A 		29.3
(3)
A 		28
avr 6.2
(-1.9) 		2.3
(-3) 		2.8
(-2.9) 		23
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.6
(-0.7)
A 		3
(3)
A 		0.7
(-3)
A 		0.8
(-2.7)
A 		2.3
(1.2)
A 		1.7
(-0.4)
A 		2
B 3.5
(3)
A 		0.7
(-3)
A 		0.9
(-2.6)
A 		2.2
(0.2)
A 		1.2
(-1.9)
A 		2.7
(1.3)
A 		3
C 0.9
(-3)
A 		8
(3)
A 		1.5
(-2.5)
A 		1.4
(-2.6)
A 		1.7
(-2.3)
A 		2.4
(-1.7)
A 		7
avr 2
(-0.9) 		3.9
(3) 		1
(-3) 		1.5
(-2) 		1.7
(-1.6) 		2.3
(-0.3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		0.7
(-2.7)
A 		0.6
(-2.8)
A 		5.7
(3)
A 		5
B 5.1
(3)
A 		0.2
(-3)
A 		1
(-2)
A 		0.2
(-3)
A 		5
C 0.5
(-3)
A 		0.8
(-2.6)
A 		0.7
(-2.7)
A 		4.9
(3)
A 		4
avr 2
(-0.2) 		0.6
(-3) 		0.8
(-2.6) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.3
(-2.3)
A 		1.1
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.7
(0.3)
A 		0.4
(-1.7)
A 		1
B 1.2
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.6
(-0.6)
A 		0.5
(-1.2)
A 		1
(1.8)
A 		1
C 0.3
(-3)
A 		2.4
(3)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		0.6
(-2.1)
A 		0.8
(-1.6)
A 		2
avr 0.6
(-1) 		1.2
(3) 		0.3
(-3) 		0.4
(-2.3) 		0.6
(-1) 		0.7
(-0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172145_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6001
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.3 NCBI
Target Description Y66A7A.3 /REP_DB=WormBase Gene ID /WP=CE20342 /GB=CAC35864.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067074 NCBI Caenorhabditis elegans Y66A7A.3 (Y66A7A.3) mRNA, complete cds. 11/11 None
Y66A7A.3 ENSEMBL cdna:known chromosome:CEL140:III:11479791:11480526:-1 gene:Y66A7A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11479786-11480522(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66A7A.3
Entrez Gene 190490 Entrez gene
SwissProt Q9XWY6 EMBL-EBI
WormBase CE20342 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35864 Hypothetical protein Y66A7A.3 [Caenorhabditis elegans] ref|NP_499475.1| Y66A7A.3 [Caenorhabditis elegans] emb|CAA21498.1| Y66A7A.3 [Caenorhabditis elegans] 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:172145_X_AT
gaattttgtgcttaaatattccaaaaaaaaacgccaaaattctggtataaatatttctga
aatttgcaaatttttcgagcatgtacctttaagctgtgcggctttgggtctcgcaacgaa
aaaaaactttggaggagagatatgcgcctttaaggagagaaaaataaaaaattattgcaa
aatttttgaaccaaaaagtgcacttttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTTGTGCTTAAATATTCCAAA 219 325 42 Antisense
AATTCTGGTATAAATATTTCTGAAA 288 177 79 Antisense
GCAAATTTTTCGAGCATGTACCTTT 115 317 107 Antisense
CGAGCATGTACCTTTAAGCTGTGCG 296 249 117 Antisense
GCATGTACCTTTAAGCTGTGCGGCT 293 311 120 Antisense
GTACCTTTAAGCTGTGCGGCTTTGG 15 447 124 Antisense
TTTAAGCTGTGCGGCTTTGGGTCTC 553 665 129 Antisense
TGCGGCTTTGGGTCTCGCAACGAAA 477 581 138 Antisense
AAAACTTTGGAGGAGAGATATGCGC 115 129 164 Antisense
GGAGGAGAGATATGCGCCTTTAAGG 85 515 172 Antisense
TGAACCAAAAAGTGCACTTTTCCAA 51 365 228 Antisense
Sequence Source Affymetrix Proprietary Database