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[172143_x_at]

Description M02F4.9 /REP_DB=WormBase Gene ID /WP=CE25059 /GB=AAK71379.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 19.2
(-1.7)
A 		3
(-3)
A 		4.2
(-2.9)
A 		75.8
(3)
A 		73
B 16.4
(-1.7)
A 		56.4
(3)
A 		5
(-3)
A 		27
(-0.4)
A 		51
C 32.1
(0.4)
A 		26.5
(-0.2)
A 		2.6
(-3)
A 		54.7
(3)
P 		52
avr 22.6
(-0.7) 		28.6
(0) 		3.9
(-3) 		52.5
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 27
(2.8)
A 		27.5
(3)
A 		21.8
(1)
A 		24.6
(2)
A 		25.7
(2.4)
A 		10.5
(-3)
A 		17
B 26.7
(3)
A 		17.3
(0.5)
A 		16.4
(0.2)
A 		4.4
(-3)
A 		10
(-1.5)
A 		13.3
(-0.6)
A 		22
C 39.5
(0.6)
A 		61.7
(3)
P 		15.1
(-2)
A 		42.3
(0.9)
A 		11.1
(-2.5)
A 		6.3
(-3)
A 		55
avr 31.1
(2) 		35.5
(3) 		17.8
(-1.2) 		23.8
(0.2) 		15.6
(-1.7) 		10
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7
(0.6)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		11.1
(3)
A 		10
B 5.2
(-1.1)
A 		13.9
(3)
A 		1.2
(-3)
A 		5.8
(-0.8)
A 		13
C 10.6
(3)
A 		7.6
(1.1)
A 		0.9
(-3)
A 		9.2
(2.1)
P 		10
avr 7.6
(2.1) 		7.4
(2) 		1.1
(-3) 		8.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5
(-1)
A 		9.8
(3)
A 		4.8
(-1.2)
A 		6.2
(0)
A 		7.8
(1.3)
A 		2.6
(-3)
A 		7
B 9.3
(3)
A 		5.8
(0.4)
A 		4
(-0.9)
A 		1.2
(-3)
A 		4.1
(-0.9)
A 		5
(-0.2)
A 		8
C 14.6
(1.5)
A 		18.8
(3)
P 		3.8
(-2.4)
A 		8.5
(-0.7)
A 		3.6
(-2.5)
A 		2.1
(-3)
A 		17
avr 9.6
(1.6) 		11.5
(3) 		4.2
(-2.3) 		5.3
(-1.5) 		5.2
(-1.6) 		3.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172143_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18605
Sequence Type Exemplar sequence
Representative Public ID M02F4.9 NCBI
Target Description M02F4.9 /REP_DB=WormBase Gene ID /WP=CE25059 /GB=AAK71379.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076116 NCBI Caenorhabditis elegans M02F4.9 (M02F4.9) mRNA, complete cds. 11/11 None
SNAP00000027798 ENSEMBL cdna:SNAP chromosome:CEL140:X:3029965:3030397:1 10/11 None
M02F4.9 ENSEMBL cdna:known chromosome:CEL140:X:3029888:3030397:1 gene:M02F4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076115 4/11 Cross Hyb Matching Probes A 
GENEFINDER00000027805 1/11 Cross Hyb Matching Probes None
M02F4.1 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3029887-3030397(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02F4.9
Entrez Gene 187402 Entrez gene
SwissProt Q95ZR4 EMBL-EBI
WormBase CE25059 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71379 Hypothetical protein M02F4.9 [Caenorhabditis elegans] ref|NP_508517.1| M02F4.9 [Caenorhabditis elegans] 5.0E-49
blast AAK71379 Hypothetical protein M02F4.9 [Caenorhabditis elegans] ref|NP_508517.1| M02F4.9 [Caenorhabditis elegans] 1.0E-41
blast AAA83204 Hypothetical protein M02F4.1 [Caenorhabditis elegans] ref|NP_508516.1| M02F4.1 [Caenorhabditis elegans] 4.0E-20
blast AAA83204 Hypothetical protein M02F4.1 [Caenorhabditis elegans] ref|NP_508516.1| M02F4.1 [Caenorhabditis elegans] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:172143_X_AT
gctagagccaaataaacatcaaacaaaaataactgagttgtcgaagtttatccaggaatt
caacaaggttctccctcatgtcctttgcgctaagaatggcgatcactgcttcaaaaacat
tcaaaatacgatcctagtcacagaagcgattggaaaaattttccacggagaaaacacagc
tcattcgatttgctctgacgtcatgaagtgtgaaggcagtttgtttgaaaatggtcgatg
ctttcgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAGAGCCAAATAAACATCAAACA 652 301 15 Antisense
GAGTTGTCGAAGTTTATCCAGGAAT 480 397 49 Antisense
AATTCAACAAGGTTCTCCCTCATGT 581 175 71 Antisense
CCTCATGTCCTTTGCGCTAAGAATG 582 267 88 Antisense
GCGCTAAGAATGGCGATCACTGCTT 372 287 101 Antisense
GGCGATCACTGCTTCAAAAACATTC 166 541 112 Antisense
AATACGATCCTAGTCACAGAAGCGA 9 169 139 Antisense
AACACAGCTCATTCGATTTGCTCTG 198 135 187 Antisense
GATTTGCTCTGACGTCATGAAGTGT 603 425 201 Antisense
GAAGGCAGTTTGTTTGAAAATGGTC 660 333 226 Antisense
TGAAAATGGTCGATGCTTTCGTGAA 52 573 240 Antisense
Sequence Source Affymetrix Proprietary Database