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[172141_at]

Description K01A12.1 /REP_DB=WormBase Gene ID /WP=CE01986 /GB=AAA64338.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 3.8
(-3)
A 		5.2
(-2.5)
A 		5.3
(-2.5)
A 		21.8
(3)
A 		18
B 6.9
(3)
A 		3.2
(-1.8)
A 		2.3
(-3)
A 		4.1
(-0.7)
A 		5
C 4.1
(-2.9)
A 		2.7
(-3)
A 		2.5
(-3)
A 		66.8
(3)
A 		64
avr 4.9
(-2.7) 		3.7
(-2.9) 		3.4
(-3) 		30.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.1
(3)
A 		3.1
(-2.7)
A 		5.5
(0.1)
A 		2.9
(-2.9)
A 		4.1
(-1.5)
A 		2.8
(-3)
A 		5
B 2
(-3)
A 		6.2
(0.5)
A 		9.1
(3)
A 		2.5
(-2.6)
A 		3
(-2.2)
A 		2.5
(-2.6)
A 		7
C 1.6
(-3)
A 		5.2
(1.2)
A 		1.9
(-2.6)
A 		6.7
(3)
A 		5.7
(1.8)
A 		3.3
(-1)
A 		5
avr 3.9
(-0.7) 		4.8
(1.4) 		5.5
(3) 		4
(-0.5) 		4.3
(0.2) 		2.9
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.4
(-2.1)
A 		1.1
(-3)
A 		1.4
(-2.1)
A 		3.2
(3)
A 		2
B 2.2
(3)
A 		0.8
(-1.9)
A 		0.5
(-3)
A 		0.9
(-1.6)
A 		2
C 1.4
(-2.7)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		11.3
(3)
A 		11
avr 1.7
(-1.9) 		0.9
(-3) 		0.9
(-3) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.5
(3)
A 		1.1
(0)
A 		1.2
(0.8)
A 		0.7
(-3)
A 		1.2
(0.8)
A 		0.7
(-3)
A 		1
B 0.7
(-3)
A 		2.1
(2.6)
A 		2.2
(3)
A 		0.7
(-3)
A 		1.2
(-1)
A 		0.9
(-2.2)
A 		2
C 0.6
(-2.6)
A 		1.6
(1.7)
A 		0.5
(-3)
A 		1.3
(0.4)
A 		1.9
(3)
A 		1.1
(-0.4)
A 		1
avr 0.9
(-3) 		1.6
(3) 		1.3
(0.4) 		0.9
(-3) 		1.4
(1.3) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16232
Sequence Type Exemplar sequence
Representative Public ID K01A12.1 NCBI
Target Description K01A12.1 /REP_DB=WormBase Gene ID /WP=CE01986 /GB=AAA64338.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K01A12.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K01A12.1 K01A12.1 /REP_DB=WormBase Gene ID /WP=CE01986 /GB=AAA64338.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017151 1/11 Cross Hyb Matching Probes None
SNAP00000014486 3/11 Cross Hyb Matching Probes None
SNAP00000032966 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8623552-8623792(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172141_AT
ataacgcgtctgcctacggagcagaagattgtaggagtacggtttgccaatttttcaaaa
aacaaaagtcgatgtgtcaaaaattatttagggggcacccggagttgaaccagggacctc
tcgatctgcagtcgaatgctctgccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACGCGTCTGCCTACGGAGCAGA 707 23 17 Antisense
AACGCGTCTGCCTACGGAGCAGAAG 620 145 19 Antisense
GCGTCTGCCTACGGAGCAGAAGATT 133 293 22 Antisense
GGAGCAGAAGATTGTAGGAGTACGG 681 519 34 Antisense
AGATTGTAGGAGTACGGTTTGCCAA 612 63 42 Antisense
TGTAGGAGTACGGTTTGCCAATTTT 211 559 46 Antisense
AAAAGTCGATGTGTCAAAAATTATT 75 131 80 Antisense
GCACCCGGAGTTGAACCAGGGACCT 635 281 111 Antisense
GACCTCTCGATCTGCAGTCGAATGC 449 383 131 Antisense
CTCTCGATCTGCAGTCGAATGCTCT 120 231 134 Antisense
ATCTGCAGTCGAATGCTCTGCCACT 25 35 140 Antisense
Sequence Source Affymetrix Proprietary Database