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[172140_x_at]

Description Y10G11A.C /REP_DB=WormBase Gene ID /WP=CE26732 /GB=CAC44303.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 133.9
(-1)
P 		98.7
(-2.1)
M 		66
(-3)
A 		274.2
(3)
P 		208
B 145.4
(-1.2)
P 		86.3
(-3)
A 		124.1
(-1.8)
P 		281.1
(3)
P 		195
C 191.3
(0.8)
P 		125.9
(-1.8)
A 		95.7
(-3)
P 		247.7
(3)
P 		152
avr 156.9
(-0.9) 		103.6
(-2.7) 		95.3
(-3) 		267.7
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 132.5
(1.8)
A 		100.2
(-0.8)
P 		148
(3)
P 		73.2
(-3)
P 		97.7
(-1)
A 		118.6
(0.6)
A 		75
B 136.1
(3)
P 		110.2
(1.5)
P 		115.8
(1.9)
P 		30.1
(-3)
A 		76.6
(-0.4)
M 		135.9
(3)
M 		106
C 115.8
(1.8)
P 		116.5
(1.9)
P 		82.6
(-3)
A 		123.7
(3)
A 		102.3
(-0.1)
M 		114.4
(1.6)
P 		41
avr 128.1
(3) 		109
(0.8) 		115.5
(1.6) 		75.7
(-3) 		92.2
(-1.1) 		123
(2.4) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 48.7
(3)
P 		21.4
(-2.2)
M 		17.3
(-3)
A 		40.1
(1.4)
P 		31
B 46.4
(0.9)
P 		21.3
(-3)
A 		28.8
(-1.8)
P 		59.9
(3)
P 		39
C 63.3
(3)
P 		36.2
(-2.4)
A 		33.4
(-3)
P 		41.8
(-1.3)
P 		30
avr 52.8
(3) 		26.3
(-3) 		26.5
(-3) 		47.3
(1.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 24.4
(-1)
A 		35.6
(3)
P 		32.2
(1.8)
P 		18.6
(-3)
P 		29.5
(0.8)
A 		28.9
(0.6)
A 		17
B 47.4
(2.5)
P 		36.7
(1)
P 		28.1
(-0.2)
P 		8
(-3)
A 		31.1
(0.2)
M 		50.7
(3)
M 		43
C 42.9
(3)
P 		35.5
(1)
P 		21
(-3)
A 		24.9
(-1.9)
A 		33.1
(0.3)
M 		38.3
(1.7)
P 		22
avr 38.2
(2.7) 		35.9
(2.1) 		27.1
(-0.3) 		17.2
(-3) 		31.2
(0.8) 		39.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172140_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19110
Sequence Type Exemplar sequence
Representative Public ID Y10G11A.C NCBI
Target Description Y10G11A.C /REP_DB=WormBase Gene ID /WP=CE26732 /GB=CAC44303.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028260 NCBI Caenorhabditis elegans Y10G11A.3 (Y10G11A.3) mRNA, complete cds. 11/11 None
SNAP00000016279 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16444664:16446649:1 11/11 None
GENEFINDER00000016282 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16444664:16446116:1 11/11 None
Y10G11A.3 ENSEMBL cdna:known chromosome:CEL140:IV:16444664:16446667:1 gene:Y10G11A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171425 5/11 Cross Hyb Matching Probes None
GENEFINDER00000016281 5/11 Cross Hyb Matching Probes None
Y10G11A.2 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16444669-16446122(+) 100.0 100.0
chrIV:16434145-16436478(+) 98.21 98.21
Public Domain and Genome References
Gene Title
Ensembl Y10G11A.3
Entrez Gene 3565151 Entrez gene
SwissProt Q7YTJ8 EMBL-EBI
WormBase CE35057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17960 Hypothetical protein Y10G11A.3 [Caenorhabditis elegans] ref|NP_001023431.1| Y10G11A.3 [Caenorhabditis elegans] 9.0E-74
blast CAE17960 Hypothetical protein Y10G11A.3 [Caenorhabditis elegans] ref|NP_001023431.1| Y10G11A.3 [Caenorhabditis elegans] 3.0E-71
blast CAE17960 Hypothetical protein Y10G11A.3 [Caenorhabditis elegans] ref|NP_001023431.1| Y10G11A.3 [Caenorhabditis elegans] 5.0E-47
blast CAE68169 Hypothetical protein CBG13828 [Caenorhabditis briggsae] 5.0E-41
blast CAE68169 Hypothetical protein CBG13828 [Caenorhabditis briggsae] 3.0E-40
blast CAD31700 Hypothetical protein Y10G11A.2 [Caenorhabditis elegans] ref|NP_741497.1| Dynein Light Chain family member (dlc-3) [Caenorhabditis elegans] 3.0E-29
blast CAD31700 Hypothetical protein Y10G11A.2 [Caenorhabditis elegans] ref|NP_741497.1| Dynein Light Chain family member (dlc-3) [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:172140_X_AT
ggattcggaaagaaattatcggccaaacaaatgcgcgccaagtttgaaaggcaaaatgag
tgtgatttcgatgagttaaaagaatctcgaaaatggcgtgaaccaccagaaaaggctctt
cgttttgagaatgtcataattcaagaaacaaatttgccatttgaacaagtcgaggaatcg
aagaaaatgttaggagatgctctgcaattatgtggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCGGAAAGAAATTATCGGCCA 679 507 25 Antisense
TTATCGGCCAAACAAATGCGCGCCA 491 677 40 Antisense
GGCCAAACAAATGCGCGCCAAGTTT 544 539 45 Antisense
AATGCGCGCCAAGTTTGAAAGGCAA 304 167 54 Antisense
AATGAGTGTGATTTCGATGAGTTAA 81 165 79 Antisense
ATCTCGAAAATGGCGTGAACCACCA 244 33 108 Antisense
GAACCACCAGAAAAGGCTCTTCGTT 73 345 124 Antisense
AGGCTCTTCGTTTTGAGAATGTCAT 602 53 137 Antisense
ATTTGCCATTTGAACAAGTCGAGGA 444 9 176 Antisense
AGAAAATGTTAGGAGATGCTCTGCA 470 73 206 Antisense
AGATGCTCTGCAATTATGTGGAATT 609 67 219 Antisense
Sequence Source Affymetrix Proprietary Database