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[172139_x_at]

Description Y46H3D.1 /REP_DB=WormBase Gene ID /WP=CE24318 /GB=AAK72304.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 13.1
(-2.1)
A 		23.2
(-1.3)
A 		3
(-3)
A 		72.9
(3)
A 		70
B 24.5
(2.7)
A 		16.6
(-0.2)
A 		8.9
(-3)
A 		25.4
(3)
A 		17
C 24.7
(1.7)
A 		28.4
(3)
A 		11.8
(-3)
A 		21.3
(0.4)
A 		17
avr 20.8
(-0.6) 		22.7
(-0.2) 		7.9
(-3) 		39.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 4
(-2.9)
A 		2.6
(-3)
A 		28.6
(-1.3)
A 		19.1
(-1.9)
A 		66.6
(1.3)
M 		92.9
(3)
A 		90
B 9.3
(-2.4)
A 		10.7
(-2.3)
A 		2.9
(-2.9)
A 		2
(-3)
A 		37.2
(-0.3)
A 		78.9
(3)
P 		77
C 11
(-2.7)
A 		34.9
(-1.3)
A 		42.9
(-0.8)
A 		6.2
(-3)
A 		41.8
(-0.9)
P 		107.5
(3)
P 		101
avr 8.1
(-3) 		16.1
(-2.4) 		24.8
(-1.8) 		9.1
(-2.9) 		48.5
(-0.1) 		93.1
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.8
(-0.6)
A 		5
(-0.5)
A 		0.8
(-3)
A 		10.7
(3)
A 		10
B 7.8
(3)
A 		4.1
(-0.9)
A 		2.1
(-3)
A 		5.4
(0.5)
A 		6
C 8.2
(3)
A 		8.2
(3)
A 		4.1
(-2.3)
A 		3.6
(-3)
A 		5
avr 6.9
(3) 		5.8
(1.6) 		2.3
(-3) 		6.6
(2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-2.9)
A 		6.2
(-1.5)
A 		4.9
(-1.8)
A 		20.1
(2.3)
M 		22.6
(3)
A 		22
B 3.2
(-2.4)
A 		3.6
(-2.4)
A 		0.7
(-3)
A 		0.5
(-3)
A 		15.1
(0)
A 		29.4
(3)
P 		29
C 4.1
(-2.5)
A 		10.6
(-1.4)
A 		10.9
(-1.3)
A 		1.2
(-3)
A 		13.5
(-0.9)
P 		36
(3)
P 		35
avr 2.7
(-2.9) 		5
(-2.4) 		5.9
(-2.2) 		2.2
(-3) 		16.2
(0.1) 		29.3
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172139_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15010
Sequence Type Exemplar sequence
Representative Public ID Y46H3D.1 NCBI
Target Description Y46H3D.1 /REP_DB=WormBase Gene ID /WP=CE24318 /GB=AAK72304.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071065 NCBI Caenorhabditis elegans Y46H3D.1 (Y46H3D.1) mRNA, complete cds. 11/11 None
GENEFINDER00000018940 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1642385:1642847:1 11/11 None
Y46H3D.1 ENSEMBL cdna:known chromosome:CEL140:V:1642340:1642951:1 gene:Y46H3D.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1642384-1642847(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3D.1
Entrez Gene 178652 Entrez gene
SwissProt Q966B2 EMBL-EBI
WormBase CE24318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503466 Y46H3D.1 [Caenorhabditis elegans] gb|AAK72304.1| Hypothetical protein Y46H3D.1 [Caenorhabditis elegans] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:172139_X_AT
atgcttcaatattttgttcttggttatctcgtgtttgagatcatccgtctcgcccaactc
cccgacgtctgtgcggtcaaattcacgccaccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCAATATTTTGTTCTTGGTT 481 43 13 Antisense
GCTTCAATATTTTGTTCTTGGTTAT 550 305 15 Antisense
AATATTTTGTTCTTGGTTATCTCGT 76 175 20 Antisense
ATTTTGTTCTTGGTTATCTCGTGTT 207 15 23 Antisense
TTTGTTCTTGGTTATCTCGTGTTTG 546 665 25 Antisense
TGTTCTTGGTTATCTCGTGTTTGAG 223 561 27 Antisense
GGTTATCTCGTGTTTGAGATCATCC 498 505 34 Antisense
TCGTGTTTGAGATCATCCGTCTCGC 210 603 41 Antisense
CCCGACGTCTGTGCGGTCAAATTCA 653 257 73 Antisense
GTCTGTGCGGTCAAATTCACGCCAC 702 471 79 Antisense
TGTGCGGTCAAATTCACGCCACCGC 56 557 82 Antisense
Sequence Source Affymetrix Proprietary Database