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[172137_s_at]

Description Y111B2A.10B /REP_DB=WormBase Gene ID /WP=CE26627 /GB=CAC35839.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 0      4grp_total > 07      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 98.4
(-3)
P 		123.7
(-0.5)
P 		160.1
(3)
P 		122.5
(-0.7)
P 		62
B 229.5
(3)
P 		111.9
(-3)
P 		118.5
(-2.7)
P 		124.7
(-2.3)
P 		118
C 123.3
(-3)
P 		136.5
(-1.7)
M 		152.9
(-0)
P 		182.8
(3)
P 		60
avr 150.4
(3) 		124
(-3) 		143.8
(1.5) 		143.3
(1.4) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 132.3
(-2.4)
P 		263.6
(3)
P 		118.8
(-3)
P 		229.1
(1.6)
P 		185.8
(-0.2)
P 		237.8
(1.9)
P 		145
B 117.6
(-3)
P 		201.6
(3)
P 		172
(0.9)
P 		175.7
(1.2)
P 		167.7
(0.6)
P 		198.9
(2.8)
P 		84
C 158.1
(-3)
P 		238.2
(3)
P 		163.7
(-2.6)
P 		165.1
(-2.5)
P 		178.2
(-1.5)
P 		224.5
(2)
P 		80
avr 136
(-3) 		234.5
(3) 		151.5
(-2.1) 		190
(0.3) 		177.2
(-0.5) 		220.4
(2.1) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 35.8
(1.5)
P 		26.9
(-0.7)
P 		41.8
(3)
P 		17.9
(-3)
P 		24
B 73.2
(3)
P 		27.6
(-2.9)
P 		27.5
(-2.9)
P 		26.6
(-3)
P 		47
C 40.8
(-0.3)
P 		39.3
(-0.7)
M 		53.3
(3)
P 		30.8
(-3)
P 		23
avr 49.9
(3) 		31.3
(-1.5) 		40.9
(0.8) 		25.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 24.4
(-3)
P 		93.8
(3)
P 		25.9
(-2.9)
P 		58.1
(-0.1)
P 		56.1
(-0.3)
P 		57.9
(-0.1)
P 		69
B 40.9
(-3)
P 		67.1
(1.7)
P 		41.8
(-2.8)
P 		46.5
(-2)
P 		68.2
(1.9)
P 		74.2
(3)
P 		33
C 58.6
(0.6)
P 		72.7
(2.7)
P 		41.7
(-1.8)
P 		33.2
(-3)
P 		57.6
(0.5)
P 		75.1
(3)
P 		42
avr 41.3
(-2.3) 		77.9
(3) 		36.5
(-3) 		45.9
(-1.6) 		60.6
(0.5) 		69.1
(1.7) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172137_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6458
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.10B NCBI
Target Description Y111B2A.10B /REP_DB=WormBase Gene ID /WP=CE26627 /GB=CAC35839.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067240(11), NM_067239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067240 NCBI Caenorhabditis elegans Y111B2A.10b (Y111B2A.10) mRNA, complete cds. 11/11 None
NM_067239 NCBI Caenorhabditis elegans Y111B2A.10a (Y111B2A.10) mRNA, complete cds. 11/11 A 
SNAP00000006157 ENSEMBL cdna:SNAP chromosome:CEL140:III:12596020:12598403:-1 11/11 None
GENEFINDER00000006279 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12596020:12598762:-1 11/11 None
Y111B2A.10b.3 ENSEMBL cdna:known chromosome:CEL140:III:12595932:12598472:-1 gene:Y111B2A.10 11/11 None
Y111B2A.10b.1 ENSEMBL cdna:known chromosome:CEL140:III:12595932:12598485:-1 gene:Y111B2A.10 11/11 A 
Y111B2A.10a ENSEMBL cdna:known chromosome:CEL140:III:12596020:12598446:-1 gene:Y111B2A.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12598282-12598399(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y111B2A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35838 Hypothetical protein Y111B2A.10a [Caenorhabditis elegans] ref|NP_499640.1| Y111B2A.10a [Caenorhabditis elegans] 0.0
blast CAC35839 Hypothetical protein Y111B2A.10b [Caenorhabditis elegans] ref|NP_499641.2| Y111B2A.10b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-6
Sequence
Target Sequence 
>C. ELEGANS:172137_S_AT
ggagatttacgattatccaatgtcgtacgctgatttaactcctgtgacaagctgctcatc
atcgtcaaattctgaagcggacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATTTACGATTATCCAATGTCG 121 519 15 Antisense
GATTATCCAATGTCGTACGCTGATT 680 429 25 Antisense
GTCGTACGCTGATTTAACTCCTGTG 472 473 36 Antisense
GTACGCTGATTTAACTCCTGTGACA 535 457 39 Antisense
TAACTCCTGTGACAAGCTGCTCATC 661 637 50 Antisense
ACTCCTGTGACAAGCTGCTCATCAT 380 99 52 Antisense
CTGTGACAAGCTGCTCATCATCGTC 115 241 56 Antisense
ACAAGCTGCTCATCATCGTCAAATT 575 113 61 Antisense
AAGCTGCTCATCATCGTCAAATTCT 87 151 63 Antisense
GCTCATCATCGTCAAATTCTGAAGC 576 299 68 Antisense
ATCGTCAAATTCTGAAGCGGACGCT 315 35 75 Antisense
Sequence Source Affymetrix Proprietary Database