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[172135_x_at]

Description Y5H2A.A /REP_DB=WormBase Gene ID /WP=CE21311 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59624.1
Cluster 6grp_total > 29      4grp_total > 33      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 42.8
(-3)
A 		90
(0.1)
A 		133.7
(3)
A 		116.5
(1.9)
A 		91
B 65.1
(-3)
A 		130.1
(3)
A 		127
(2.7)
A 		82.7
(-1.4)
A 		65
C 37.2
(-3)
A 		109.9
(1.7)
A 		104.4
(1.3)
A 		130.1
(3)
A 		93
avr 48.4
(-3) 		110
(2) 		121.7
(3) 		109.8
(2) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 39.3
(-1.3)
A 		78.4
(1.8)
A 		17.1
(-3)
A 		37.3
(-1.4)
A 		94.4
(3)
A 		37.5
(-1.4)
A 		77
B 57.3
(0.6)
A 		73.2
(1.8)
A 		69.7
(1.5)
A 		10.5
(-3)
A 		89.3
(3)
A 		49
(-0.1)
A 		79
C 90.7
(3)
A 		73.7
(1.8)
A 		91
(3)
A 		6.4
(-3)
A 		85.3
(2.6)
A 		49
(0)
A 		85
avr 62.4
(0.7) 		75.1
(1.8) 		59.3
(0.5) 		18.1
(-3) 		89.7
(3) 		45.2
(-0.7) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 15.6
(-3)
A 		19.5
(-1.8)
A 		34.9
(3)
A 		17.1
(-2.5)
A 		19
B 20.8
(-1.7)
A 		32.1
(3)
A 		29.4
(1.9)
A 		17.6
(-3)
A 		15
C 12.3
(-3)
A 		31.6
(1.8)
A 		36.4
(3)
A 		21.9
(-0.6)
A 		24
avr 16.2
(-3) 		27.7
(1) 		33.6
(3) 		18.9
(-2.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 7.2
(-2.2)
A 		27.9
(2.9)
A 		3.7
(-3)
A 		9.5
(-1.6)
A 		28.5
(3)
A 		9.1
(-1.7)
A 		25
B 19.9
(0.1)
A 		24.4
(0.9)
A 		16.9
(-0.5)
A 		2.8
(-3)
A 		36.3
(3)
A 		18.3
(-0.2)
A 		34
C 33.6
(3)
A 		22.5
(0.9)
A 		23.2
(1.1)
A 		1.3
(-3)
A 		27.6
(1.9)
A 		16.4
(-0.2)
A 		32
avr 20.2
(0.6) 		24.9
(1.7) 		14.6
(-0.7) 		4.5
(-3) 		30.8
(3) 		14.6
(-0.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172135_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19474
Sequence Type Exemplar sequence
Representative Public ID Y5H2A.A NCBI
Target Description Y5H2A.A /REP_DB=WormBase Gene ID /WP=CE21311 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59624.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022371 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2272269:2274528:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070442 2/11 Cross Hyb Matching Probes A 
NM_070443 2/11 Cross Hyb Matching Probes A 
NM_182410 5/11 Cross Hyb Matching Probes A B 
NM_075864 1/11 Cross Hyb Matching Probes A 
NM_070471 2/11 Cross Hyb Matching Probes A 
NM_070472 2/11 Cross Hyb Matching Probes A 
NM_070473 2/11 Cross Hyb Matching Probes A 
NM_070474 2/11 Cross Hyb Matching Probes A 
SNAP00000030809 2/11 Cross Hyb Matching Probes None
SNAP00000030810 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030889 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030899 2/11 Cross Hyb Matching Probes None
SNAP00000033700 2/11 Cross Hyb Matching Probes None
SNAP00000033701 2/11 Cross Hyb Matching Probes None
SNAP00000033702 2/11 Cross Hyb Matching Probes None
SNAP00000033703 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033774 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033779 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033780 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033786 2/11 Cross Hyb Matching Probes None
SNAP00000022368 5/11 Cross Hyb Matching Probes None
GENEFINDER00000022372 5/11 Cross Hyb Matching Probes None
SNAP00000018681 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018690 1/11 Cross Hyb Matching Probes None
SNAP00000018624 1/11 Cross Hyb Matching Probes None
Y73F8A.8 2/11 Cross Hyb Matching Probes A 
Y73F8A.9 2/11 Cross Hyb Matching Probes A 
Y105C5A.3 2/11 Cross Hyb Matching Probes A 
Y105C5A.4 2/11 Cross Hyb Matching Probes A 
Y105C5A.5 2/11 Cross Hyb Matching Probes A 
Y105C5A.6 2/11 Cross Hyb Matching Probes A 
Y5H2A.3 5/11 Cross Hyb Matching Probes A B 
F19G12.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2272268-2275065(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86286 Hypothetical protein Y5H2A.4 [Caenorhabditis elegans] 3.0E-27
blast NP_872210 Activated in Blocked Unfolded protein response family member (abu-4) [Caenorhabditis elegans] gb|AAO25980.1| Activated in blocked unfolded protein response protein 4 [Caenorhabditis elegans] 5.0E-23
blast AAG24067 Activated in blocked unfolded protein response protein 2 [Caenorhabditis elegans] ref|NP_508265.1| Activated in Blocked Unfolded protein response family member (abu-2) [Caenorhabditis elegans] 1.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 6.5E-27
Sequence
Target Sequence 
>C. ELEGANS:172135_X_AT
aatcagcatgccaatctccagttattgctcctcagatcatcactttggaagtagttccag
aatgtcagcaacagtgtgctcctcaatgccaacagccatcagcaccacaatgccagcagt
gccagaatacctgtcagcagttcgctccagtttgccagcaacagtgtgctccacaatgca
cacttccatccgcaccagcttgccaacaatgtcaaacttcgtgccaacagactcaacagt
gccaccagcaatgcattccacaatgccagcaaccagctgctccacaatgtcagcaatgtc
aatcagcatgccaatctccagttgttgctccacaaattgtaactgtcatcctagaagctt
cagtgtctcaatctgctcaatgtgaaccagaatgccaacaatcatgccaacagcaatgtg
ttcaacaacaacaaccaatgattcaatgcgctccagcttgcacccaatcatgctcacaat
cctgctctattgctcaaccagctcagatgccatgcatgactgaatcgatcaactcctgct
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAGCATGCCAATCTCCAGTTAT 151 171 1550 Antisense
TTATTGCTCCTCAGATCATCACTTT 277 679 1571 Antisense
AGAATACCTGTCAGCAGTTCGCTCC 142 75 1673 Antisense
GTTTGCCAGCAACAGTGTGCTCCAC 438 451 1699 Antisense
CCAGCAATGCATTCCACAATGCCAG 653 271 1794 Antisense
CAATCAGCATGCCAATCTCCAGTTG 637 181 1849 Antisense
GAAGCTTCAGTGTCTCAATCTGCTC 353 341 1903 Antisense
CAATGATTCAATGCGCTCCAGCTTG 150 183 1985 Antisense
TTGCACCCAATCATGCTCACAATCC 333 703 2007 Antisense
CTCAACCAGCTCAGATGCCATGCAT 658 227 2042 Antisense
TGACTGAATCGATCAACTCCTGCTC 184 571 2066 Antisense
Sequence Source Affymetrix Proprietary Database