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[172132_x_at]

Description Y24D9A.A /REP_DB=WormBase Gene ID /WP=CE21456 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60462.1
Cluster 6grp_total > 10      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 11.5
(-3)
A 		15
(-1.7)
A 		14.7
(-1.8)
A 		27.6
(3)
A 		16
B 2.8
(-3)
A 		12.1
(0.1)
A 		20.8
(3)
A 		10.7
(-0.4)
A 		18
C 18.7
(-2.3)
A 		18.8
(-2.3)
A 		13
(-3)
A 		63.8
(3)
A 		51
avr 11
(-3) 		15.3
(-1.9) 		16.2
(-1.6) 		34
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 3.5
(-2.7)
A 		27.8
(3)
A 		23.7
(2)
A 		9.9
(-1.2)
A 		4.8
(-2.4)
A 		2.1
(-3)
A 		26
B 14.6
(-1.7)
A 		9.5
(-3)
A 		28.3
(2)
A 		11.7
(-2.4)
A 		32.2
(3)
A 		15.4
(-1.4)
A 		23
C 19.9
(-1.8)
A 		75.3
(3)
A 		18.6
(-1.9)
A 		7.7
(-2.9)
A 		6.1
(-3)
A 		10.5
(-2.6)
A 		69
avr 12.7
(-2.3) 		37.5
(3) 		23.5
(0) 		9.8
(-2.9) 		14.4
(-1.9) 		9.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.2
(3)
A 		3.3
(-3)
A 		3.9
(1)
A 		4
(1.7)
A 		1
B 0.9
(-3)
A 		3
(0.2)
A 		4.8
(3)
A 		2.3
(-0.8)
A 		4
C 6.2
(-1.4)
A 		5.4
(-2.1)
A 		4.5
(-3)
A 		10.8
(3)
A 		6
avr 3.8
(-3) 		3.9
(-2.7) 		4.4
(-1.1) 		5.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		9.9
(3)
A 		5.2
(-0)
A 		2.5
(-1.7)
A 		1.4
(-2.4)
A 		0.5
(-3)
A 		9
B 5.1
(-1.8)
A 		3.2
(-2.9)
A 		6.9
(-0.7)
A 		3.1
(-3)
A 		13.1
(3)
A 		5.7
(-1.4)
A 		10
C 7.4
(-1.4)
A 		23
(3)
A 		4.7
(-2.1)
A 		1.5
(-3)
A 		2
(-2.9)
A 		3.5
(-2.4)
A 		22
avr 4.4
(-1.8) 		12
(3) 		5.6
(-1) 		2.4
(-3) 		5.5
(-1.1) 		3.2
(-2.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172132_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19130
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.A NCBI
Target Description Y24D9A.A /REP_DB=WormBase Gene ID /WP=CE21456 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60462.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068157 NCBI Caenorhabditis elegans Y24D9A.7 (Y24D9A.7) mRNA, complete cds. 11/11 None
SNAP00000027691 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4404931:4405164:-1 11/11 None
Y24D9A.7 ENSEMBL cdna:known chromosome:CEL140:IV:4404931:4405164:-1 gene:Y24D9A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4404936-4405170(-) 85.47 100.0
Public Domain and Genome References
Gene Title
Ensembl Y24D9A.7
Entrez Gene 189532 Entrez gene
SwissProt Q9N555 EMBL-EBI
WormBase CE21456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60462 Hypothetical protein Y24D9A.7 [Caenorhabditis elegans] ref|NP_500558.1| Y24D9A.7 [Caenorhabditis elegans] 5.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500558.1 1 15-37
Y24D9A.7 1 15-37
SNAP00000027691 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:172132_X_AT
cttggtcagtcagtcagtcagccaccaccaccaccaccacaacccgtttcgcttctgctg
ctagtgccgctgcaaaagggcttcttcttcttcttcgtcttttccttattcttcgtagaa
tgcgaagatgttcaaacaaaccgcttcattccattctcgcctccggcgacgacgacgacg
ttgttttgtcgccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGTCAGTCAGTCAGTCAGCCAC 588 217 17 Antisense
TGCTGCTAGTGCCGCTGCAAAAGGG 709 527 72 Antisense
GCTAGTGCCGCTGCAAAAGGGCTTC 435 279 76 Antisense
GCTGCAAAAGGGCTTCTTCTTCTTC 708 295 85 Antisense
TGCAAAAGGGCTTCTTCTTCTTCTT 134 573 87 Antisense
GTCTTTTCCTTATTCTTCGTAGAAT 458 467 113 Antisense
TCGTAGAATGCGAAGATGTTCAAAC 709 601 129 Antisense
GATGTTCAAACAAACCGCTTCATTC 494 409 143 Antisense
TTCAAACAAACCGCTTCATTCCATT 610 683 147 Antisense
CGGCGACGACGACGACGTTGTTTTG 141 241 180 Antisense
GACGACGACGTTGTTTTGTCGCCGT 654 377 187 Antisense
Sequence Source Affymetrix Proprietary Database