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[172131_x_at]

Description Y73E7A.A /REP_DB=WormBase Gene ID /WP=CE26411 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23383.1
Cluster 6grp_total > 01      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 9.5
(-3)
A 		29.4
(1.6)
A 		10
(-2.9)
A 		35.4
(3)
A 		26
B 32.9
(3)
A 		8.9
(-2.9)
A 		8.3
(-3)
A 		17.9
(-0.7)
A 		25
C 2.8
(-3)
A 		24.7
(1.5)
A 		15.5
(-0.4)
A 		32
(3)
A 		29
avr 15.1
(-1.7) 		21
(0.4) 		11.3
(-3) 		28.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 26.2
(0.9)
A 		2.8
(-3)
A 		27
(1.1)
A 		5.7
(-2.5)
A 		38.5
(3)
A 		11.5
(-1.5)
A 		36
B 18.2
(-0.3)
A 		35
(3)
A 		5.6
(-2.7)
A 		18.2
(-0.3)
A 		15.1
(-0.9)
A 		4.1
(-3)
A 		31
C 2.9
(-3)
A 		30.8
(3)
A 		8.2
(-1.8)
A 		9.3
(-1.6)
A 		2.8
(-3)
A 		13.4
(-0.7)
A 		28
avr 15.8
(-0.2) 		22.9
(3) 		13.6
(-1.2) 		11.1
(-2.4) 		18.8
(1.1) 		9.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.4
(-1.7)
A 		6.4
(3)
A 		2.6
(-3)
A 		5.2
(1.1)
A 		4
B 10.5
(3)
A 		2.2
(-2.8)
A 		1.9
(-3)
A 		3.8
(-1.7)
A 		9
C 0.9
(-3)
A 		7.1
(3)
A 		5.4
(1.4)
A 		5.4
(1.4)
A 		6
avr 4.9
(2.1) 		5.2
(3) 		3.3
(-3) 		4.8
(1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.8
(-0.8)
A 		1
(-3)
A 		5.9
(-0.2)
A 		1.4
(-2.8)
A 		11.6
(3)
A 		2.8
(-2)
A 		11
B 6.3
(-0.1)
A 		11.6
(3)
A 		1.4
(-3)
A 		4.8
(-1)
A 		6.2
(-0.2)
A 		1.5
(-2.9)
A 		10
C 1.1
(-2.9)
A 		9.4
(3)
A 		2.1
(-2.2)
A 		1.9
(-2.3)
A 		0.9
(-3)
A 		4.5
(-0.5)
A 		9
avr 4.1
(-1.2) 		7.3
(3) 		3.1
(-2.5) 		2.7
(-3) 		6.2
(1.6) 		2.9
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172131_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18647
Sequence Type Exemplar sequence
Representative Public ID Y73E7A.A NCBI
Target Description Y73E7A.A /REP_DB=WormBase Gene ID /WP=CE26411 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23383.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y73E7A.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y73E7A.A Y73E7A.A /REP_DB=WormBase Gene ID /WP=CE26411 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23383.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058472 11/11 Negative Strand Matching Probes A 
GENEFINDER00000005643 11/11 Negative Strand Matching Probes None
Y73E7A.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1630536-1630764(-) 99.12 100.0
Sequence
Target Sequence 
>C. ELEGANS:172131_X_AT
tctccaagtactttcagcgcatcgtccacatttcgagcttcaccctcttcgacttccaac
ttgttgagattctccacaagaagatccccagccacttcgattttctgagcttcttgcttc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCAAGTACTTTCAGCGCATCGT 531 609 41 Antisense
CCTCTTCGACTTCCAACTTGTTGAG 429 267 84 Antisense
GACTTCCAACTTGTTGAGATTCTCC 382 371 91 Antisense
TTCCAACTTGTTGAGATTCTCCACA 401 701 94 Antisense
GATTCTCCACAAGAAGATCCCCAGC 690 431 108 Antisense
CCCAGCCACTTCGATTTTCTGAGCT 324 257 127 Antisense
CAGCCACTTCGATTTTCTGAGCTTC 416 203 129 Antisense
AGCCACTTCGATTTTCTGAGCTTCT 527 83 130 Antisense
CCACTTCGATTTTCTGAGCTTCTTG 311 275 132 Antisense
ACTTCGATTTTCTGAGCTTCTTGCT 7 105 134 Antisense
TCGATTTTCTGAGCTTCTTGCTTCC 205 603 137 Antisense
Sequence Source Affymetrix Proprietary Database