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[172130_at]

Description Y34D9A.L /REP_DB=WormBase Gene ID /WP=CE21536 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59442.1
Cluster 6grp_total > 30      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 6.7
(-3)
A 		20.2
(-1.7)
A 		70.3
(3)
A 		7.8
(-2.9)
A 		64
B 6.1
(-2.9)
A 		95.4
(3)
A 		30.5
(-1.3)
A 		5.3
(-3)
A 		90
C 6.5
(-3)
A 		80
(3)
A 		43.5
(0)
A 		64.4
(1.7)
A 		74
avr 6.4
(-3) 		65.2
(3) 		48.1
(1.3) 		25.8
(-1) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 8.4
(-3)
A 		52.9
(3)
A 		9.5
(-2.9)
A 		14.7
(-2.2)
A 		11
(-2.6)
A 		30
(-0.1)
A 		45
B 42.4
(2)
A 		6.6
(-3)
A 		49.4
(3)
A 		20.2
(-1.1)
A 		9.2
(-2.6)
A 		6.9
(-3)
A 		43
C 14
(-3)
A 		29.5
(0.1)
A 		23.8
(-1.1)
A 		44.2
(3)
A 		35.9
(1.4)
A 		32.1
(0.6)
A 		30
avr 21.6
(-1.4) 		29.7
(3) 		27.6
(1.9) 		26.4
(1.2) 		18.7
(-3) 		23
(-0.7) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.5
(-2.5)
A 		4.4
(-1.9)
A 		18.4
(3)
A 		1.1
(-3)
A 		17
B 2
(-2.8)
A 		23.6
(3)
A 		7.1
(-1.4)
A 		1.1
(-3)
A 		23
C 2.2
(-3)
A 		23
(3)
A 		15.2
(0.8)
A 		10.9
(-0.5)
A 		21
avr 2.2
(-3) 		17
(3) 		13.6
(1.6) 		4.4
(-2.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.5
(-3)
A 		18.8
(3)
A 		2.1
(-2.8)
A 		3.7
(-2.2)
A 		3.3
(-2.4)
A 		7.3
(-1)
A 		17
B 14.7
(3)
A 		2.2
(-3)
A 		12
(1.7)
A 		5.3
(-1.5)
A 		3.7
(-2.3)
A 		2.6
(-2.8)
A 		13
C 5.2
(-3)
A 		9
(0.6)
A 		6.1
(-2.2)
A 		8.9
(0.5)
A 		11.6
(3)
A 		10.7
(2.2)
A 		6
avr 7.1
(-1.4) 		10
(3) 		6.7
(-2) 		6
(-3) 		6.2
(-2.7) 		6.9
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18625
Sequence Type Exemplar sequence
Representative Public ID Y34D9A.L NCBI
Target Description Y34D9A.L /REP_DB=WormBase Gene ID /WP=CE21536 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59442.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y34D9A.L
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y34D9A.L Y34D9A.L /REP_DB=WormBase Gene ID /WP=CE21536 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59442.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1062027-1062132(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172130_AT
tgcatgcctctcttgccaggagagcaacagcacctcctaatcgatagactcgaaaagaga
gtgcccaccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATGCCTCTCTTGCCAGGAGAGC 257 579 16 Antisense
GCATGCCTCTCTTGCCAGGAGAGCA 584 307 17 Antisense
ATGCCTCTCTTGCCAGGAGAGCAAC 358 41 19 Antisense
GCCTCTCTTGCCAGGAGAGCAACAG 194 283 21 Antisense
TTGCCAGGAGAGCAACAGCACCTCC 628 701 28 Antisense
CAACAGCACCTCCTAATCGATAGAC 257 189 40 Antisense
ACAGCACCTCCTAATCGATAGACTC 398 109 42 Antisense
CAGCACCTCCTAATCGATAGACTCG 270 205 43 Antisense
GCACCTCCTAATCGATAGACTCGAA 340 315 45 Antisense
GACTCGAAAAGAGAGTGCCCACCGC 664 373 62 Antisense
ACTCGAAAAGAGAGTGCCCACCGCT 411 99 63 Antisense
Sequence Source Affymetrix Proprietary Database