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[172129_x_at]

Description Y105E8B.K /REP_DB=WormBase Gene ID /WP=CE25175 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60854.1
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 35      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 61      6grp_total > 35      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 34      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 510.8
(2.4)
P 		553.9
(3)
P 		490
(2)
P 		155.4
(-3)
P 		399
B 486.5
(0)
P 		604.4
(1.9)
P 		673.4
(3)
P 		297
(-3)
P 		376
C 586.8
(2.5)
P 		618.6
(3)
P 		552.1
(1.9)
P 		254.2
(-3)
P 		364
avr 528
(1.9) 		592.3
(3) 		571.8
(2.7) 		235.5
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 299.7
(-2.4)
P 		444.2
(3)
P 		400.7
(1.4)
P 		356.8
(-0.3)
P 		283.5
(-3)
P 		325.5
(-1.4)
P 		161
B 442.7
(0.5)
P 		509.5
(3)
P 		424.5
(-0.1)
P 		368.7
(-2.2)
P 		346.1
(-3)
P 		432.3
(0.2)
P 		163
C 613.9
(3)
P 		443.2
(-0.1)
P 		403.9
(-0.9)
P 		287.1
(-3)
P 		445.6
(-0.1)
P 		420.7
(-0.5)
P 		327
avr 452.1
(2.4) 		465.6
(3) 		409.7
(0.4) 		337.5
(-3) 		358.4
(-2) 		392.8
(-0.4) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 186
(3)
P 		120.2
(0.6)
P 		128.1
(0.9)
P 		22.7
(-3)
P 		163
B 155.1
(2.9)
P 		149.3
(2.6)
P 		156
(3)
P 		63.3
(-3)
P 		93
C 194.2
(3)
P 		177.8
(2.3)
P 		192.4
(2.9)
P 		42.9
(-3)
P 		151
avr 178.4
(3) 		149.1
(1.7) 		158.8
(2.1) 		43
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 55.2
(-3)
P 		158
(3)
P 		87.3
(-1.1)
P 		90.5
(-0.9)
P 		85.6
(-1.2)
P 		79.3
(-1.6)
P 		103
B 154
(1.7)
P 		169.6
(3)
P 		103.1
(-2.5)
P 		97.7
(-3)
P 		140.6
(0.6)
P 		161.2
(2.3)
P 		72
C 227.5
(3)
P 		135.2
(-0.3)
P 		102.8
(-1.4)
P 		57.7
(-3)
P 		144.2
(0.1)
P 		140.8
(-0.1)
P 		170
avr 145.6
(2.3) 		154.3
(3) 		97.7
(-1.7) 		82
(-3) 		123.5
(0.4) 		127.1
(0.7) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172129_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18828
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.K NCBI
Target Description Y105E8B.K /REP_DB=WormBase Gene ID /WP=CE25175 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60854.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170941 NCBI Caenorhabditis elegans AdaPtin, Gamma chain (clathrin associated complex) family member (apg-1) (apg-1) mRNA, complete cds. 11/11 A 
SNAP00000013329 ENSEMBL cdna:SNAP chromosome:CEL140:I:14409618:14441788:1 11/11 None
GENEFINDER00000013514 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14414161:14425537:1 11/11 None
Y105E8A.9.2 ENSEMBL cdna:known chromosome:CEL140:I:14414139:14426042:1 gene:Y105E8A.9 11/11 None
Y105E8A.9.1 ENSEMBL cdna:known chromosome:CEL140:I:14414146:14426042:1 gene:Y105E8A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14425387-14425468(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol apg-1
Ensembl Y105E8A.9
Entrez Gene 173304 Entrez gene
SwissProt Q8WQB3 EMBL-EBI
WormBase CE29847 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263728_AT gamma-adaptin, putative at
ATGENOME1:14981_AT gamma-adaptin, putative at
CANINE:1598549_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE:1591975_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE:1587695_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.10636.1.S1_S_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.10636.2.S1_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.10636.2.S1_S_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.1399.1.A1_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
DROSOPHILA_2:1634294_S_AT dm
DROSGENOME1:144729_AT dm
CHICKEN:GGA.14620.1.A1_AT adaptor-related protein complex 1, gamma 1 subunit gga
CHICKEN:GGA.7223.1.A1_AT adaptor-related protein complex 1, gamma 1 subunit gga
CHICKEN:GGA.7223.1.A1_S_AT adaptor-related protein complex 1, gamma 1 subunit gga
CHICKEN:GGAAFFX.12654.1.S1_AT adaptor-related protein complex 1, gamma 1 subunit gga
HG-FOCUS:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133A:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133A_2:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBA:RC_AA406105_AT adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBB:RC_N26777_AT adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBB:RC_AA142984_AT adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:G4501978_3P_AT adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:HS.172635.0.A2_3P_AT adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:HS.172635.0.A1_3P_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:225754_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133B:225754_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:225771_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133B:225771_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95AV2:35274_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95B:51942_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95B:58911_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:241294_AT Adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133B:241294_AT Adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95D:91931_AT Adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBC:RC_N66443_AT Adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:HS.170332.0.A1_3P_AT Adaptor-related protein complex 1, gamma 1 subunit hs
MU11KSUBA:AA409002_RC_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MU11KSUBB:MSA.2150.0_G_AT adaptor protein complex AP-1, gamma 1 subunit mm
MU11KSUBB:MSA.2150.0_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74AV2:92288_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74AV2:103242_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74AV2:161593_R_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOE430A:1460712_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430A_2:1460712_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430_2:1460712_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOE430A:1423388_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430A_2:1423388_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430_2:1423388_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74BV2:106634_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOE430B:1434081_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOUSE430_2:1434081_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOUSE430A_2:1460658_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOE430A:1460658_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOUSE430_2:1460658_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MU19KSUBA:TC14536_S_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MU19KSUBA:TC16670_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MU19KSUBB:TC29727_I_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
RG-U34C:RC_AI237324_AT adaptor-related protein complex 1, gamma 1 subunit rn
RAE230A:1373816_AT adaptor-related protein complex 1, gamma 1 subunit rn
RAT230_2:1373816_AT adaptor-related protein complex 1, gamma 1 subunit rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6461 protein complex assembly inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30130 clathrin coat of trans-Golgi network vesicle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21660 Hypothetical protein Y105E8A.9 [Caenorhabditis elegans] ref|NP_740937.1| AdaPtin, Gamma chain (clathrin associated complex) family member (apg-1) [Caenorhabditis elegans] 0.0
blast CAE64132 Hypothetical protein CBG08748 [Caenorhabditis briggsae] 0.0
blast XP_396336 PREDICTED: similar to CG9113-PC, isoform C [Apis mellifera] 0.0
blast CAC48128 Hypothetical protein Y105E8A.10c [Caenorhabditis elegans] ref|NP_001021682.1| Y105E8A.10c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.4E-13
Pfam IPR002634 EMBL-EBI BolA-like protein 2.7E-13
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.4E-13
Pfam IPR006775 EMBL-EBI Protein of unknown function DUF608 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.4E-13
Sequence
Target Sequence 
>C. ELEGANS:172129_X_AT
atgcgcaccaaaatctcgtacattgtcgacggaacggaacaagtcggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGCACCAAAATCTCGTACATTG 322 41 13 Antisense
GCGCACCAAAATCTCGTACATTGTC 620 285 15 Antisense
CGCACCAAAATCTCGTACATTGTCG 73 255 16 Antisense
GCACCAAAATCTCGTACATTGTCGA 280 315 17 Antisense
ACCAAAATCTCGTACATTGTCGACG 245 85 19 Antisense
CAAAATCTCGTACATTGTCGACGGA 100 189 21 Antisense
AAATCTCGTACATTGTCGACGGAAC 628 117 23 Antisense
AATCTCGTACATTGTCGACGGAACG 446 169 24 Antisense
TCTCGTACATTGTCGACGGAACGGA 508 601 26 Antisense
CGTACATTGTCGACGGAACGGAACA 510 231 29 Antisense
TCGACGGAACGGAACAAGTCGGCGA 229 599 38 Antisense
Sequence Source Affymetrix Proprietary Database