[Home] | [Total List]

[172128_x_at]

Description Y48G9A.A /REP_DB=WormBase Gene ID /WP=CE25322 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60707.1
Cluster 6grp_total > 62      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 4.8
(-3)
A 		10.9
(-2.7)
A 		54.5
(-0.2)
A 		110.5
(3)
P 		106
B 6.5
(-2.3)
A 		24.9
(3)
A 		4.1
(-3)
A 		5.5
(-2.6)
A 		21
C 8.3
(-3)
A 		45.4
(-0.2)
A 		11.3
(-2.8)
A 		87.1
(3)
A 		79
avr 6.5
(-3) 		27.1
(-1) 		23.3
(-1.4) 		67.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6.9
(0.9)
A 		4.5
(-1.8)
A 		8.7
(3)
A 		4.5
(-1.8)
A 		5
(-1.3)
A 		3.5
(-3)
A 		5
B 6.7
(-2.1)
A 		4.5
(-3)
A 		6.1
(-2.4)
A 		4.7
(-2.9)
A 		19.7
(3)
A 		5.1
(-2.8)
A 		15
C 11
(-2)
A 		9.2
(-2.4)
A 		29.3
(2.3)
A 		32.1
(3)
A 		6.7
(-3)
A 		14.6
(-1.1)
A 		25
avr 8.2
(-1.5) 		6.1
(-3) 		14.7
(3) 		13.8
(2.4) 		10.5
(0.1) 		7.7
(-1.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-3)
A 		2.4
(-2.8)
A 		14.2
(2.2)
A 		16.2
(3)
P 		14
B 2.1
(-1.6)
A 		6.2
(3)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		5
C 2.8
(-3)
A 		13.1
(2.2)
A 		4
(-2.4)
A 		14.7
(3)
A 		12
avr 2.2
(-3) 		7.2
(0.5) 		6.4
(-0) 		10.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-0.3)
A 		1.6
(1.4)
A 		1.9
(3)
A 		1.1
(-1.4)
A 		1.5
(0.8)
A 		0.8
(-3)
A 		1
B 2.3
(-2.1)
A 		1.5
(-2.8)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		8
(3)
A 		1.9
(-2.5)
A 		7
C 4.1
(-0.8)
A 		2.8
(-2.3)
A 		7.5
(3)
A 		6.5
(1.9)
A 		2.2
(-3)
A 		4.9
(0.1)
A 		5
avr 2.6
(-1.1) 		2
(-3) 		3.6
(2.1) 		3
(0.2) 		3.9
(3) 		2.5
(-1.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172128_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19049
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.A NCBI
Target Description Y48G9A.A /REP_DB=WormBase Gene ID /WP=CE25322 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60707.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G9A.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G9A.A Y48G9A.A /REP_DB=WormBase Gene ID /WP=CE25322 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60707.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065108 11/11 Negative Strand Matching Probes A B 
GENEFINDER00000015836 11/11 Negative Strand Matching Probes None
Y48G9A.1 11/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2187986-2188121(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172128_X_AT
gtaacgaatacgccaattctcgtccatcagagccagttggagttgtggaagaagaagctt
acgagcatgtgaacaatattgagagattagacgttgtccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACGAATACGCCAATTCTCGTCC 536 461 17 Antisense
ACGAATACGCCAATTCTCGTCCATC 208 93 20 Antisense
CAATTCTCGTCCATCAGAGCCAGTT 205 181 30 Antisense
AATTCTCGTCCATCAGAGCCAGTTG 224 177 31 Antisense
TTCTCGTCCATCAGAGCCAGTTGGA 670 689 33 Antisense
CTCGTCCATCAGAGCCAGTTGGAGT 318 233 35 Antisense
CCATCAGAGCCAGTTGGAGTTGTGG 411 269 40 Antisense
GAGCCAGTTGGAGTTGTGGAAGAAG 174 385 46 Antisense
GGAAGAAGAAGCTTACGAGCATGTG 288 527 63 Antisense
AAGCTTACGAGCATGTGAACAATAT 290 149 71 Antisense
TATTGAGAGATTAGACGTTGTCCGG 252 665 93 Antisense
Sequence Source Affymetrix Proprietary Database