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[172127_x_at]

Description F42G9.9B /REP_DB=WormBase Gene ID /WP=CE28321 /GEN=ptl-1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 30      6grp_cgc > 22      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 399.3
(3)
P 		258.9
(-1.4)
A 		209.3
(-3)
A 		317.8
(0.4)
P 		190
B 389
(3)
P 		211
(-1.8)
A 		165.9
(-3)
A 		343.3
(1.8)
P 		223
C 343.6
(3)
P 		212.2
(-1.8)
A 		178.5
(-3)
A 		241.7
(-0.7)
M 		165
avr 377.3
(3) 		227.4
(-1.7) 		184.6
(-3) 		300.9
(0.6) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 338.8
(3)
P 		301
(1.9)
M 		182.1
(-1.7)
P 		161.6
(-2.3)
A 		176.3
(-1.8)
A 		137.2
(-3)
A 		202
B 345.6
(3)
P 		260.3
(0.8)
P 		186.8
(-1.1)
P 		156.7
(-1.9)
M 		188.1
(-1)
A 		112
(-3)
M 		234
C 322.2
(3)
M 		247.8
(0.5)
P 		190.5
(-1.4)
A 		161.6
(-2.3)
A 		163.6
(-2.3)
A 		141.4
(-3)
A 		181
avr 335.5
(3) 		269.7
(1.1) 		186.5
(-1.4) 		160
(-2.1) 		176
(-1.7) 		130.2
(-3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 145.4
(3)
P 		56.2
(-2.4)
A 		54.7
(-2.5)
A 		46.5
(-3)
P 		99
B 124
(3)
P 		52.1
(-2)
A 		38.4
(-3)
A 		73.2
(-0.6)
P 		86
C 113.8
(3)
P 		61
(-1.3)
A 		62.2
(-1.2)
A 		40.8
(-3)
M 		73
avr 127.7
(3) 		56.4
(-2.6) 		51.8
(-3) 		53.5
(-2.9) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 62.5
(-0.6)
P 		107.1
(3)
M 		39.7
(-2.5)
P 		41
(-2.4)
A 		53.2
(-1.4)
A 		33.4
(-3)
A 		74
B 120.3
(3)
P 		86.7
(0.4)
P 		45.4
(-2.7)
P 		41.5
(-3)
M 		76.4
(-0.3)
A 		41.8
(-3)
M 		79
C 119.4
(3)
M 		75.6
(-0)
P 		48.5
(-1.9)
A 		32.5
(-3)
A 		52.9
(-1.6)
A 		47.3
(-2)
A 		87
avr 100.7
(3) 		89.8
(2) 		44.5
(-2.4) 		38.3
(-3) 		60.8
(-0.8) 		40.8
(-2.8) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172127_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8118
Sequence Type Exemplar sequence
Representative Public ID F42G9.9B NCBI
Target Description F42G9.9B /REP_DB=WormBase Gene ID /WP=CE28321 /GEN=ptl-1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027407(9), NM_001027406(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027407 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 9/11 None
NM_001027406 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 9/11 None
F42G9.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:763805:771327:1 gene:F42G9.9 9/11 None
F42G9.9c ENSEMBL cdna:known chromosome:CEL140:III:765190:771377:1 gene:F42G9.9 9/11 A 
F42G9.9b.2 ENSEMBL cdna:known chromosome:CEL140:III:765190:771162:1 gene:F42G9.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027405 7/11 Cross Hyb Matching Probes None
NM_001027408 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038506 6/11 Cross Hyb Matching Probes None
SNAP00000038493 7/11 Cross Hyb Matching Probes None
F42G9.9a 7/11 Cross Hyb Matching Probes A 
F42G9.9d 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175230 4 2 NM_001027406 172127_x_at (9), 175660_at (10), 175661_s_at (11)
NM_001027407 172127_x_at (9), 175660_at (11), 175661_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:765194-771162(+) 84.53 100.0
Public Domain and Genome References
Ensembl F42G9.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70646 Protein with tau-like repeats protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022577.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] 1.0E-169
blast AAA80687 TAU-1b 1.0E-169
blast AAK70647 Protein with tau-like repeats protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022578.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAC47829.1| PTL-1B protein [Caenorhabditis elegans] 1.0E-151
blast AAK70645 Protein with tau-like repeats protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022576.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAB97090.1| PTL-1A protein [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 8.0E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.6E-9
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.8E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.7E-8
Sequence
Target Sequence 
>C. ELEGANS:172127_X_AT
gtcaccaatcataaggcgggcggcggaaatgtggaaattttctcggagaaaagactctac
aacgcccaatccaaagttggctccttgaaaaacgcaacacacgttgccggaggcggaaac
gttcaaatcgaaaacaggaagctagatttttcggcagcttcaccaaaggttggctcgaaa
accaattatcagccagcaaagtctgacgtgaagatagtttcggagaagttgacttggcaa
gctaaatcaaaagttgggtcaatggacaacgcagcgcataagcctgctggtggaaatgtt
cagatattaagtcaaaaattgaactggaaagccgagagtaaggttgggtcaaaggacaat
atgaatcatcggcctggtggtggaaatgttcaagtaatttccagcgaagtggcagtaagt
cgaccaaaaatgatgacggccacaataattgataagaagaaggattttgcaaaacgacaa
agtgtctcacagagatcttcaagcaattctctactgcccaacaaatttccaggcgccatt
tatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACCAATCATAAGGCGGGCGGCG 324 465 904 Antisense
AGAAAAGACTCTACAACGCCCAATC 681 71 950 Antisense
ACGCCCAATCCAAAGTTGGCTCCTT 365 91 965 Antisense
CAACACACGTTGCCGGAGGCGGAAA 574 187 998 Antisense
CTAGATTTTTCGGCAGCTTCACCAA 357 225 1045 Antisense
AACGCAGCGCATAAGCCTGCTGGTG 201 145 1171 Antisense
GAATCATCGGCCTGGTGGTGGAAAT 114 325 1266 Antisense
AAGTAATTTCCAGCGAAGTGGCAGT 406 153 1295 Antisense
GATCTTCAAGCAATTCTCTACTGCC 619 419 1397 Antisense
TTCTCTACTGCCCAACAAATTTCCA 589 689 1410 Antisense
ACAAATTTCCAGGCGCCATTTATCC 387 111 1424 Antisense
Sequence Source Affymetrix Proprietary Database