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[172126_x_at]

Description W07B3.2A /REP_DB=WormBase Gene ID /WP=CE17290 /GEN=gei-4 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 31      6grp_total > 26      4grp_total > 41      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 685
1 2 3 4 range
A 929.7
(-3)
P 		1454.6
(3)
P 		1280.9
(1)
P 		987
(-2.3)
P 		525
B 860.1
(-3)
P 		1010.3
(-0.3)
P 		994.3
(-0.6)
P 		1189.4
(3)
P 		329
C 769.9
(-3)
P 		1139.1
(3)
P 		1096.8
(2.3)
P 		891.2
(-1)
P 		369
avr 853.2
(-3) 		1201.3
(3) 		1124
(1.7) 		1022.5
(-0.1) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1056
1 2 3 4 5 6 range
A 833.7
(-0.7)
P 		1332.1
(3)
P 		534.1
(-3)
P 		824.2
(-0.8)
P 		775.1
(-1.2)
P 		1096
(1.2)
P 		798
B 1071.3
(0.3)
P 		1395.1
(3)
P 		717.9
(-2.7)
P 		743.5
(-2.5)
P 		678.3
(-3)
P 		795.9
(-2)
P 		717
C 1589.7
(3)
P 		1228.2
(0.4)
P 		967.2
(-1.4)
P 		827.8
(-2.4)
P 		861.3
(-2.2)
P 		745.1
(-3)
P 		845
avr 1164.9
(1.4) 		1318.5
(3) 		739.7
(-3) 		798.5
(-2.4) 		771.6
(-2.7) 		879
(-1.6) 		579
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 338.5
(3)
P 		315.8
(2.3)
P 		334.8
(2.9)
P 		144.5
(-3)
P 		194
B 274.3
(3)
P 		249.5
(-0.4)
P 		230.4
(-3)
P 		253.5
(0.2)
P 		44
C 254.8
(-0.3)
P 		327.5
(1.6)
P 		382.3
(3)
P 		150.3
(-3)
P 		232
avr 289.2
(1.8) 		297.6
(2.2) 		315.8
(3) 		182.8
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 153.7
(-2.4)
P 		473.8
(3)
P 		116.3
(-3)
P 		209
(-1.4)
P 		233.9
(-1)
P 		266.9
(-0.5)
P 		358
B 372.8
(1.1)
P 		464.4
(3)
P 		174.3
(-3)
P 		196.9
(-2.5)
P 		275.6
(-0.9)
P 		296.8
(-0.5)
P 		290
C 589.2
(3)
P 		374.8
(-0)
P 		246.2
(-1.9)
P 		166.5
(-3)
P 		278.7
(-1.4)
P 		249.4
(-1.8)
P 		423
avr 371.9
(1.5) 		437.7
(3) 		178.9
(-3) 		190.8
(-2.7) 		262.7
(-1.1) 		271
(-0.9) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172126_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8210
Sequence Type Exemplar sequence
Representative Public ID W07B3.2A NCBI
Target Description W07B3.2A /REP_DB=WormBase Gene ID /WP=CE17290 /GEN=gei-4 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064787(11), NM_064788(10), NM_064789(11), NM_001027640(11), NM_181925(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064787 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 A 
NM_064788 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 10/11 A 
NM_064789 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 A 
NM_001027640 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 None
NM_181925 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 10/11 A 
SNAP00000043170 ENSEMBL cdna:SNAP chromosome:CEL140:III:344938:348145:-1 10/11 None
GENEFINDER00000043172 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:344938:348399:-1 11/11 None
W07B3.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:344213:348432:-1 gene:W07B3.2 11/11 None
W07B3.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:344306:348426:-1 gene:W07B3.2 11/11 None
W07B3.2d.1 ENSEMBL cdna:known chromosome:CEL140:III:344807:346884:-1 gene:W07B3.2 10/11 A 
W07B3.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:344814:348608:-1 gene:W07B3.2 10/11 None
W07B3.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:344814:348426:-1 gene:W07B3.2 10/11 None
W07B3.2f ENSEMBL cdna:known chromosome:CEL140:III:344938:348426:-1 gene:W07B3.2 11/11 None
W07B3.2b ENSEMBL cdna:known chromosome:CEL140:III:344938:348399:-1 gene:W07B3.2 11/11 A 
W07B3.2d.2 ENSEMBL cdna:known chromosome:CEL140:III:344938:347439:-1 gene:W07B3.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175195 6 5 NM_001027640 172126_x_at (11), 184496_s_at (11)
NM_064787 172126_x_at (11), 174934_at (11), 184496_s_at (11)
NM_064788 172126_x_at (10), 184496_s_at (11)
NM_064789 172126_x_at (11), 184496_s_at (11)
NM_181925 172126_x_at (10), 184496_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:344937-348399(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07B3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68913 Gex interacting protein protein 4, isoform a [Caenorhabditis elegans] ref|NP_497188.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAU20837 Gex interacting protein protein 4, isoform f [Caenorhabditis elegans] ref|NP_001022811.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAC68910 Gex interacting protein protein 4, isoform b [Caenorhabditis elegans] ref|NP_497190.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAP82634 Gex interacting protein protein 4, isoform c [Caenorhabditis elegans] ref|NP_497189.2| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172126_X_AT
gaaagaagagtcttggccctctcatgagcaatctgacacgcaaatcgaccatgatctcga
tctcggagactcgtacaatcaaaaacgctacactccaaagcgtcgtcgcaacgagatgga
cgacatgatcagcgccggacagatggccgtcggatcctctggaaccatcacaatgggcac
cggcacccccgccaaaaaggacgatatggacgctctctcctcgttggaacgtgacgtcgt
caagcgcacacagcacgctcagcagatccttctccgacaacgcgcgaatcagtcgtcggg
aacgccacgctcggttacaccaccgccacaggcctatataatctcgaatggtcagcaaca
gcaccaacagttggttggaaatcagggaaacaatgggattggacagcaccaggtgctcca
tcaaggacacatgcaacagcagcagattcaggtgtcacaccagcagtcgtcccaatcgat
tcctcagaacatctacacttctggcatgattatccaaaatcagggacaacagcaacaagg
ccagcagcagcagcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGAAGAGTCTTGGCCCTCTCAT 604 357 1053 Antisense
CACTCCAAAGCGTCGTCGCAACGAG 641 197 1143 Antisense
TGATCAGCGCCGGACAGATGGCCGT 117 565 1178 Antisense
GGATCCTCTGGAACCATCACAATGG 62 513 1204 Antisense
AAGGACGATATGGACGCTCTCTCCT 376 161 1249 Antisense
ACAACGCGCGAATCAGTCGTCGGGA 262 111 1329 Antisense
ACCGCCACAGGCCTATATAATCTCG 672 89 1374 Antisense
CACCAGGTGCTCCATCAAGGACACA 54 203 1459 Antisense
CAGCAGCAGATTCAGGTGTCACACC 210 205 1489 Antisense
GAACATCTACACTTCTGGCATGATT 347 351 1539 Antisense
CAACAAGGCCAGCAGCAGCAGCAGG 416 189 1585 Antisense
Sequence Source Affymetrix Proprietary Database