[Home] | [Total List]

[172125_x_at]

Description F58B6.3C /REP_DB=WormBase Gene ID /WP=CE28478 /GEN=par-2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 60      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 107.7
(3)
A 		107.7
(3)
P 		92.9
(-3)
A 		97.1
(-1.3)
A 		15
B 98.5
(1.9)
P 		96.6
(1.7)
A 		110.8
(3)
M 		43.2
(-3)
A 		68
C 105.3
(1.9)
P 		115.8
(3)
P 		113.4
(2.7)
P 		58.7
(-3)
A 		57
avr 103.8
(2.6) 		106.7
(3) 		105.7
(2.9) 		66.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 81.5
(-2.8)
A 		73.2
(-3)
M 		108
(-2.2)
P 		91.9
(-2.6)
M 		153.9
(-1.2)
P 		342.1
(3)
P 		269
B 100.9
(-1.6)
A 		75.6
(-3)
M 		91.9
(-2.1)
A 		113.5
(-1)
A 		126.4
(-0.3)
A 		187.3
(3)
P 		112
C 121.2
(-1)
P 		80
(-3)
A 		90.6
(-2.5)
A 		170.2
(1.4)
P 		202.4
(3)
P 		193.2
(2.5)
P 		122
avr 101.2
(-2.1) 		76.3
(-3) 		96.8
(-2.3) 		125.2
(-1.2) 		160.9
(0.1) 		240.9
(3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 39.2
(3)
A 		23.4
(-0.8)
P 		24.3
(-0.6)
A 		14.2
(-3)
A 		25
B 31.4
(3)
P 		23.9
(1)
A 		25.7
(1.5)
M 		9.2
(-3)
A 		22
C 34.9
(2.1)
P 		33.3
(1.7)
P 		39.5
(3)
P 		9.9
(-3)
A 		30
avr 35.2
(3) 		26.9
(0.9) 		29.8
(1.7) 		11.1
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 15
(-3)
A 		26
(-2)
M 		23.5
(-2.3)
P 		23.3
(-2.3)
M 		46.4
(-0.2)
P 		83.3
(3)
P 		68
B 35.1
(-1.4)
A 		25.2
(-2.6)
M 		22.3
(-3)
A 		30.1
(-2)
A 		51.3
(0.7)
A 		69.8
(3)
P 		48
C 44.9
(0.1)
P 		24.4
(-2.8)
A 		23.1
(-3)
A 		34.2
(-1.4)
P 		65.5
(3)
P 		64.7
(2.9)
P 		42
avr 31.7
(-1.9) 		25.2
(-2.7) 		23
(-3) 		29.2
(-2.3) 		54.4
(0.8) 		72.6
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172125_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8272
Sequence Type Exemplar sequence
Representative Public ID F58B6.3C NCBI
Target Description F58B6.3C /REP_DB=WormBase Gene ID /WP=CE28478 /GEN=par-2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027459(11), L26987(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027459 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-2) (par-2) mRNA, complete cds. 11/11 None
L26987 NCBI Caenorhabditis elegans par-2 mRNA, complete cds. 10/11 None
SNAP00000003675 ENSEMBL cdna:SNAP chromosome:CEL140:III:1081369:1101627:1 10/11 None
GENEFINDER00000003680 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1084050:1094518:1 10/11 None
F58B6.3b ENSEMBL cdna:known chromosome:CEL140:III:1081392:1095035:1 gene:F58B6.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175275 2 1 NM_001027459 172125_x_at (11), 175620_at (11)
NM_064931 176609_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1081396-1094789(+) 94.97 100.0
Public Domain and Genome References
Ensembl F58B6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73890 Abnormal embryonic partitioning of cytoplasm protein 2, isoform b [Caenorhabditis elegans] ref|NP_001022630.1| abnormal embryonic PARtitioning of cytoplasm family member (par-2) [Caenorhabditis elegans] 0.0
blast AAA62312 par-2 0.0
blast T33809 par-2 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.3E-8
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:172125_X_AT
gcaattgtcaaagttctcggctctcggctattatactggaataggccggaagtttgagcg
tgtcgcatcgggctgtgagattacgctcgtcgtttttggacactctggagccggaaaaac
cacttttgttcgcgcgattcgtcaactattcctggagggcaccgaccgtattcgcataat
tccgatcgccgagcgatatcggctcgctggaatcggaatgatgccgttcccggagggaga
taaccgtcttccgcacatcgtttcgatggtgctcaacaacgacgagactgacatggaata
cgtgctggacattatcgatccggaatatgataattcgaatcttccgcaggcatatatgga
cgcctgtgacgctgcctacctactcgtcgacacccggaacccggcttcaatactgtcggc
tcatcagattcatcgaaatatgaaacatgctcagcacattcatgtatggctggaagctcg
gattaaaactaaatttttggggcctaaaaatctgaaaaaatcgatgctcctctcaatttg
tgaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTGTCAAAGTTCTCGGCTCTC 120 323 2043 Antisense
TAGGCCGGAAGTTTGAGCGTGTCGC 174 627 2084 Antisense
TTACGCTCGTCGTTTTTGGACACTC 548 681 2123 Antisense
TGTTCGCGCGATTCGTCAACTATTC 417 561 2169 Antisense
GTATTCGCATAATTCCGATCGCCGA 352 453 2210 Antisense
GATATCGGCTCGCTGGAATCGGAAT 560 425 2237 Antisense
GAATCGGAATGATGCCGTTCCCGGA 611 325 2252 Antisense
GATAATTCGAATCTTCCGCAGGCAT 127 421 2371 Antisense
CATATATGGACGCCTGTGACGCTGC 641 213 2393 Antisense
CACCCGGAACCCGGCTTCAATACTG 213 161 2433 Antisense
GATGCTCCTCTCAATTTGTGAACGT 3 415 2565 Antisense
Sequence Source Affymetrix Proprietary Database