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[172122_at]

Description Y37E11C.A /REP_DB=WormBase Gene ID /WP=CE26067 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 92      4grp_total > 51      6grp_cgc > 98      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 125.8
(-0.7)
A 		183.2
(3)
A 		171.8
(2.3)
A 		91.2
(-3)
A 		92
B 121.4
(0.4)
A 		187.1
(3)
A 		178.3
(2.6)
A 		37.5
(-3)
A 		150
C 137.3
(-1.4)
A 		248.9
(3)
A 		125.1
(-1.9)
A 		96.6
(-3)
A 		152
avr 128.2
(-0.6) 		206.4
(3) 		158.4
(0.8) 		75.1
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 106.9
(0.3)
A 		84.1
(-1.5)
A 		75.1
(-2.2)
A 		141.8
(3)
A 		72.2
(-2.4)
A 		64.7
(-3)
A 		77
B 104.7
(-0.9)
A 		85.7
(-2.6)
A 		89.5
(-2.2)
A 		90.7
(-2.1)
A 		150.5
(3)
A 		80.5
(-3)
A 		70
C 117.6
(0.9)
A 		110
(0.2)
A 		114.5
(0.6)
A 		70
(-3)
A 		143.9
(3)
A 		73.3
(-2.7)
A 		74
avr 109.7
(1.5) 		93.3
(-0.5) 		93
(-0.5) 		100.8
(0.4) 		122.2
(3) 		72.8
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 45.8
(3)
A 		39.8
(1.9)
A 		44.9
(2.8)
A 		13.3
(-3)
A 		33
B 38.7
(1.8)
A 		46.2
(3)
A 		41.3
(2.2)
A 		8
(-3)
A 		38
C 45.5
(0.2)
A 		71.6
(3)
A 		43.6
(-0)
A 		16.3
(-3)
A 		55
avr 43.3
(1.6) 		52.5
(3) 		43.3
(1.6) 		12.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.7
(-1.8)
A 		29.9
(1.2)
A 		16.3
(-2.8)
A 		36
(3)
A 		21.8
(-1.2)
A 		15.7
(-3)
A 		20
B 36.4
(-0.8)
A 		28.5
(-2)
A 		21.7
(-3)
A 		24
(-2.7)
A 		61.2
(3)
A 		30
(-1.7)
A 		40
C 43.6
(2.4)
A 		33.6
(0.6)
A 		29.1
(-0.2)
A 		14.1
(-3)
A 		46.6
(3)
A 		24.5
(-1.1)
A 		33
avr 33.2
(0.1) 		30.7
(-0.6) 		22.4
(-3) 		24.7
(-2.3) 		43.2
(3) 		23.4
(-2.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19142
Sequence Type Exemplar sequence
Representative Public ID Y37E11C.A NCBI
Target Description Y37E11C.A /REP_DB=WormBase Gene ID /WP=CE26067 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y37E11C.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y37E11C.A Y37E11C.A /REP_DB=WormBase Gene ID /WP=CE26067 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171303 11/11 Negative Strand Matching Probes A 
NM_171304 11/11 Negative Strand Matching Probes None
NM_171305 11/11 Negative Strand Matching Probes None
SNAP00000011889 11/11 Negative Strand Matching Probes None
GENEFINDER00000011896 11/11 Negative Strand Matching Probes None
Y37E11C.1a 11/11 Negative Strand Matching Probes A 
Y37E11C.1b 11/11 Negative Strand Matching Probes A 
Y37E11C.1c 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3523704-3523845(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172122_AT
tactctggtcgccgagttgaccggccgatgtccggacgtacaaaccaccagaggctgcgt
cgaaagtgctccgatcatccgatccggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCTGGTCGCCGAGTTGACCGGC 214 645 33 Antisense
GACGTACAAACCACCAGAGGCTGCG 25 379 67 Antisense
TACAAACCACCAGAGGCTGCGTCGA 591 641 71 Antisense
CAAACCACCAGAGGCTGCGTCGAAA 410 191 73 Antisense
AACCACCAGAGGCTGCGTCGAAAGT 366 147 75 Antisense
CCACCAGAGGCTGCGTCGAAAGTGC 70 275 77 Antisense
CAGAGGCTGCGTCGAAAGTGCTCCG 126 205 81 Antisense
CTGCGTCGAAAGTGCTCCGATCATC 162 237 87 Antisense
TCGAAAGTGCTCCGATCATCCGATC 486 601 92 Antisense
GTGCTCCGATCATCCGATCCGGAGC 680 479 98 Antisense
TGCTCCGATCATCCGATCCGGAGCC 289 579 99 Antisense
Sequence Source Affymetrix Proprietary Database