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[172121_x_at]

Description Y47D7A.7 /REP_DB=WormBase Gene ID /WP=CE24348 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 50.1
(-3)
M 		113.1
(0.8)
A 		70.7
(-1.8)
A 		149
(3)
P 		99
B 89.9
(3)
A 		72.9
(-2.5)
A 		71.5
(-3)
A 		86.7
(2)
A 		18
C 100.6
(-0.2)
A 		104.4
(0.2)
P 		77.2
(-3)
A 		127.7
(3)
P 		51
avr 80.2
(-2.1) 		96.8
(-0) 		73.1
(-3) 		121.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 84
(3)
A 		48.1
(-0.7)
A 		38.7
(-1.7)
A 		43.3
(-1.2)
A 		78.8
(2.5)
P 		26.5
(-3)
A 		58
B 60.7
(-1.4)
P 		67.2
(-1)
A 		52.5
(-1.8)
A 		32.8
(-3)
A 		134.8
(3)
P 		48.2
(-2.1)
A 		102
C 75.8
(-0.5)
A 		44.7
(-2.4)
A 		96.8
(0.8)
A 		84.7
(0.1)
P 		131.2
(3)
P 		35.5
(-3)
A 		96
avr 73.5
(-0.2) 		53.3
(-1.7) 		62.7
(-1) 		53.6
(-1.7) 		114.9
(3) 		36.7
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.3
(-3)
M 		24.6
(3)
A 		18.5
(-2.8)
A 		21.8
(0.3)
P 		6
B 28.7
(3)
A 		18
(-2.3)
A 		16.6
(-3)
A 		18.5
(-2.1)
A 		12
C 33.3
(3)
A 		30
(1.3)
P 		26.9
(-0.3)
A 		21.5
(-3)
P 		12
avr 26.8
(3) 		24.2
(0.5) 		20.7
(-2.9) 		20.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 15.5
(0.1)
A 		17.1
(0.7)
A 		8.4
(-2.3)
A 		11
(-1.4)
A 		23.8
(3)
P 		6.5
(-3)
A 		17
B 21.1
(-1.4)
P 		22.4
(-1.2)
A 		12.7
(-2.5)
A 		8.7
(-3)
A 		54.8
(3)
P 		18
(-1.8)
A 		46
C 28.1
(0.2)
A 		13.6
(-2.7)
A 		24.6
(-0.5)
A 		17
(-2)
P 		42.5
(3)
P 		11.9
(-3)
A 		31
avr 21.6
(-1) 		17.7
(-1.8) 		15.2
(-2.3) 		12.2
(-3) 		40.4
(3) 		12.1
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172121_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14963
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.7 NCBI
Target Description Y47D7A.7 /REP_DB=WormBase Gene ID /WP=CE24348 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071817 NCBI Caenorhabditis elegans Y47D7A.7 (Y47D7A.7) mRNA, complete cds. 11/11 None
SNAP00000043260 ENSEMBL cdna:SNAP chromosome:CEL140:V:4419268:4419681:-1 11/11 None
GENEFINDER00000043283 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4419268:4419681:-1 11/11 None
Y47D7A.7 ENSEMBL cdna:known chromosome:CEL140:V:4419268:4419681:-1 gene:Y47D7A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071818 2/11 Cross Hyb Matching Probes A 
NM_071823 4/11 Cross Hyb Matching Probes A 
SNAP00000043261 2/11 Cross Hyb Matching Probes None
SNAP00000043267 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043274 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043280 2/11 Cross Hyb Matching Probes None
Y47D7A.2 2/11 Cross Hyb Matching Probes A 
Y47D7A.11 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4419267-4419681(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.7
Entrez Gene 189984 Entrez gene
SwissProt Q9N3V1 EMBL-EBI
WormBase CE24348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60636 Hypothetical protein Y47D7A.7 [Caenorhabditis elegans] ref|NP_504218.1| Y47D7A.7 [Caenorhabditis elegans] 9.0E-22
blast AAF60640 Hypothetical protein Y47D7A.2 [Caenorhabditis elegans] ref|NP_504219.1| Y47D7A.2 [Caenorhabditis elegans] 2.0E-19
blast CAE56035 Hypothetical protein CBG23601 [Caenorhabditis briggsae] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:172121_X_AT
tctcttggtcatccttgttcaatgtggatacccagttgctgagaatagctatccaactac
accatcctatccaacaccaccaccatcctacccaactccgaagaagtacccagtcgctcc
aacatatccatctacaccatcctactctgctcaaccaccaccagctccatctgcttatac
ttcaagtgacaatcaagaagatactgaatctgaatcagctaccagtgcctccgcaacatc
cgaatatcgcaagcgagccaaggcacgtaccgcacacaatcgccaattccaacgacgtgc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTTGGTCATCCTTGTTCAATGT 283 613 39 Antisense
GTTCAATGTGGATACCCAGTTGCTG 286 445 55 Antisense
GAATAGCTATCCAACTACACCATCC 183 327 81 Antisense
ACTCCGAAGAAGTACCCAGTCGCTC 586 99 133 Antisense
CAGCTCCATCTGCTTATACTTCAAG 543 203 200 Antisense
TCCATCTGCTTATACTTCAAGTGAC 118 591 204 Antisense
AATCTGAATCAGCTACCAGTGCCTC 339 167 245 Antisense
CCTCCGCAACATCCGAATATCGCAA 312 265 266 Antisense
AACATCCGAATATCGCAAGCGAGCC 491 133 273 Antisense
CGCAAGCGAGCCAAGGCACGTACCG 168 255 286 Antisense
CAATCGCCAATTCCAACGACGTGCT 133 183 315 Antisense
Sequence Source Affymetrix Proprietary Database