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[172120_x_at]

Description Y22D7AL.X /REP_DB=WormBase Gene ID /WP=CE26510 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 04      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_total > 05      4grp_total > 02      6grp_high1_sub > De      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 552
1 2 3 4 range
A 50.1
(-3)
P 		61.4
(-2.9)
P 		61.4
(-2.9)
P 		579.4
(3)
P 		529
B 80.6
(-1.9)
P 		27
(-3)
P 		72.7
(-2.1)
P 		318.6
(3)
P 		292
C 103.9
(-2.6)
P 		115.3
(-2.4)
P 		72.4
(-3)
P 		522.8
(3)
P 		450
avr 78.2
(-2.8) 		67.9
(-3) 		68.8
(-3) 		473.6
(3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 88.7
(-0.8)
P 		65.9
(-2.9)
P 		129.2
(3)
P 		65.9
(-2.9)
P 		101.3
(0.4)
P 		65
(-3)
P 		64
B 107
(3)
P 		80.3
(0.1)
P 		51.3
(-3)
P 		65.8
(-1.4)
P 		78.4
(-0.1)
P 		72.2
(-0.7)
P 		56
C 96.4
(0.3)
P 		144.7
(3)
P 		38.1
(-3)
A 		38.7
(-3)
A 		64.2
(-1.5)
P 		54.8
(-2.1)
P 		107
avr 97.4
(3) 		97
(2.9) 		72.9
(-0.6) 		56.8
(-3) 		81.3
(0.6) 		64
(-1.9) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 18.2
(-2.6)
P 		13.3
(-3)
P 		16.1
(-2.8)
P 		84.8
(3)
P 		72
B 25.7
(-1.1)
P 		6.7
(-3)
P 		16.8
(-2)
P 		67.9
(3)
P 		61
C 34.4
(-2.1)
P 		33.1
(-2.2)
P 		25.2
(-3)
P 		88.2
(3)
P 		63
avr 26.1
(-2.2) 		17.7
(-3) 		19.4
(-2.8) 		80.3
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 16.4
(-2.8)
P 		23.4
(0.1)
P 		28.1
(2)
P 		16.7
(-2.6)
P 		30.6
(3)
P 		15.8
(-3)
P 		15
B 37.2
(3)
P 		26.7
(0.4)
P 		12.5
(-3)
P 		17.4
(-1.8)
P 		31.9
(1.7)
P 		26.9
(0.5)
P 		25
C 35.7
(1.6)
P 		44.1
(3)
P 		9.7
(-2.7)
A 		7.8
(-3)
A 		20.8
(-0.9)
P 		18.3
(-1.3)
P 		36
avr 29.8
(2.4) 		31.4
(3) 		16.8
(-2) 		14
(-3) 		27.8
(1.8) 		20.3
(-0.8) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172120_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19066
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.X NCBI
Target Description Y22D7AL.X /REP_DB=WormBase Gene ID /WP=CE26510 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y22D7AL.X
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AL.X Y22D7AL.X /REP_DB=WormBase Gene ID /WP=CE26510 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1654033-1657165(+) 36.53 100.0
Sequence
Target Sequence 
>C. ELEGANS:172120_X_AT
ctgagcctgagcatgagcctgagcatgagcctgagcatgagcctgagcatgagccctttt
ttttcgagcattttattttttccaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAGCCTGAGCATGAGCCTGAGCA 362 209 890 Antisense
AGCCTGAGCATGAGCCTGAGCATGA 288 83 893 Antisense
AGCATGAGCCTGAGCATGAGCCTGA 485 65 899 Antisense
TGAGCCTGAGCATGAGCCTGAGCAT 579 569 903 Antisense
GAGCATGAGCCTGAGCATGAGCCTG 284 389 910 Antisense
GAGCCTGAGCATGAGCCTGAGCATG 530 385 916 Antisense
GAGCATGAGCCTGAGCATGAGCCCT 285 389 922 Antisense
CATGAGCCTGAGCATGAGCCCTTTT 363 209 925 Antisense
AGCATGAGCCCTTTTTTTTCGAGCA 178 79 935 Antisense
TTTCGAGCATTTTATTTTTTCCAAT 323 671 951 Antisense
TCGAGCATTTTATTTTTTCCAATTT 539 601 953 Antisense
Sequence Source Affymetrix Proprietary Database