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[172119_at]

Description Y57E12B.C /REP_DB=WormBase Gene ID /WP=CE24471 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 44      6grp_total > 04      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 71.3
(-3)
M 		90.3
(-0.8)
M 		123.2
(3)
P 		86.2
(-1.3)
P 		52
B 116.4
(0.5)
P 		135.2
(3)
P 		90.5
(-3)
A 		96.7
(-2.2)
P 		45
C 86.1
(-2.9)
A 		111.9
(3)
A 		96.4
(-0.5)
M 		85.6
(-3)
P 		26
avr 91.3
(-2.5) 		112.5
(3) 		103.4
(0.6) 		89.5
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 120.3
(3)
P 		87.4
(-0.2)
A 		100.5
(1.1)
P 		59.1
(-3)
A 		69.7
(-2)
M 		62.2
(-2.7)
P 		61
B 83.9
(0.8)
P 		100.4
(3)
P 		54.9
(-3)
A 		65.3
(-1.6)
A 		67.4
(-1.4)
A 		64.7
(-1.7)
A 		46
C 97.7
(1.1)
A 		107.2
(2)
P 		79.7
(-0.5)
A 		111.6
(2.4)
A 		118.2
(3)
P 		53
(-3)
P 		65
avr 100.6
(3) 		98.3
(2.7) 		78.4
(-0.3) 		78.7
(-0.2) 		85.1
(0.7) 		60
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.9
(1.1)
M 		19.6
(-0.9)
M 		32.2
(3)
P 		12.6
(-3)
P 		20
B 37.1
(3)
P 		33.4
(1.7)
P 		21
(-2.9)
A 		20.6
(-3)
P 		17
C 28.5
(1.4)
A 		32.2
(2.6)
A 		33.6
(3)
M 		14.4
(-3)
P 		19
avr 30.5
(3) 		28.4
(2.1) 		28.9
(2.3) 		15.9
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 22.2
(-0.3)
P 		31.1
(3)
A 		21.9
(-0.4)
P 		15
(-3)
A 		21
(-0.8)
M 		15.2
(-2.9)
P 		16
B 29.2
(1.7)
P 		33.4
(3)
P 		13.3
(-3)
A 		17.3
(-1.8)
A 		27.4
(1.2)
A 		24.1
(0.2)
A 		20
C 36.2
(2.4)
A 		32.7
(1.4)
P 		20.3
(-2.3)
A 		22.5
(-1.6)
A 		38.2
(3)
P 		17.8
(-3)
P 		20
avr 29.2
(1.6) 		32.4
(3) 		18.5
(-2.9) 		18.3
(-3) 		28.9
(1.5) 		19
(-2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19413
Sequence Type Exemplar sequence
Representative Public ID Y57E12B.C NCBI
Target Description Y57E12B.C /REP_DB=WormBase Gene ID /WP=CE24471 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072353 NCBI Caenorhabditis elegans Y57E12B.2 (Y57E12B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000007828 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6926953:6931542:-1 10/11 None
Y57E12B.2 ENSEMBL cdna:known chromosome:CEL140:V:6931447:6931542:-1 gene:Y57E12B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6931447-6931543(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57E12B.2
Entrez Gene 3565892 Entrez gene
SwissProt Q95XV2 EMBL-EBI
WormBase CE24471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast BAA08309.1 ryanodine receptor [Caenorhabditis elegans] 3.0E-50
blast AAD53013 ryanodine receptor [Expression vector unc-68:GFP(1-8)] 2.0E-48
blast CAE71970 Hypothetical protein CBG19042 [Caenorhabditis briggsae] 3.0E-39
blast AAK68536 Hypothetical protein Y57E12B.2 [Caenorhabditis elegans] ref|NP_504754.1| Y57E12B.2 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:172119_AT
atggccgacaaggaggagcagggaggaggcgaacaggatgatgtctcttttctccgaacg
gttagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCGACAAGGAGGAGCAGGGAG 389 53 13 Antisense
GGCCGACAAGGAGGAGCAGGGAGGA 649 541 15 Antisense
GGAGGAGCAGGGAGGAGGCGAACAG 164 515 24 Antisense
GAGCAGGGAGGAGGCGAACAGGATG 700 387 28 Antisense
GGGAGGAGGCGAACAGGATGATGTC 487 495 33 Antisense
GGAGGCGAACAGGATGATGTCTCTT 570 515 37 Antisense
GGCGAACAGGATGATGTCTCTTTTC 317 541 40 Antisense
CGAACAGGATGATGTCTCTTTTCTC 709 251 42 Antisense
AACAGGATGATGTCTCTTTTCTCCG 18 137 44 Antisense
ACAGGATGATGTCTCTTTTCTCCGA 661 107 45 Antisense
TGTCTCTTTTCTCCGAACGGTTAGT 464 503 54 Antisense
Sequence Source Affymetrix Proprietary Database