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[172118_x_at]

Description Y57E12B.D /REP_DB=WormBase Gene ID /WP=CE22642 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 93      4grp_total > 04      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 14.4
(-0.6)
A 		16.8
(0.3)
A 		7.5
(-3)
A 		24.6
(3)
A 		17
B 45.4
(2.1)
A 		37.3
(1.1)
A 		52.5
(3)
A 		3.5
(-3)
A 		49
C 17.3
(-1.9)
A 		11.9
(-2.4)
A 		4.2
(-3)
A 		76.7
(3)
A 		73
avr 25.7
(-1.1) 		22
(-2.7) 		21.4
(-3) 		34.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1562
1 2 3 4 5 6 range
A 3
(-3)
A 		10.9
(-3)
A 		26
(-2.9)
A 		792
(0.8)
P 		1238.8
(3)
P 		302.9
(-1.5)
P 		1236
B 8.5
(-3)
A 		4.2
(-3)
A 		12.2
(-3)
A 		615
(-0.7)
P 		1565.1
(3)
P 		318.2
(-1.8)
P 		1561
C 47.5
(-2.8)
A 		3.2
(-3)
A 		7.9
(-3)
A 		731.3
(-0.1)
P 		1499.9
(3)
P 		354.5
(-1.6)
P 		1497
avr 19.7
(-2.9) 		6.1
(-3) 		15.4
(-3) 		712.8
(-0) 		1434.6
(3) 		325.2
(-1.7) 		1429
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.2
(3)
A 		3.6
(0)
A 		2
(-3)
A 		3.6
(0)
A 		3
B 14.5
(3)
A 		9.2
(0.7)
A 		12.2
(2)
A 		0.7
(-3)
A 		14
C 5.7
(-0.8)
A 		3.4
(-2)
A 		1.5
(-3)
A 		12.9
(3)
A 		11
avr 8.5
(3) 		5.4
(-2.6) 		5.2
(-3) 		5.7
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 635
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.9
(-2.9)
A 		5.7
(-2.9)
A 		200.9
(0.2)
P 		373.8
(3)
P 		73.8
(-1.8)
P 		373
B 3
(-3)
A 		1.4
(-3)
A 		3
(-3)
A 		162.9
(-1.5)
P 		635.9
(3)
P 		118.7
(-1.9)
P 		635
C 17.6
(-2.8)
A 		1
(-3)
A 		2
(-3)
A 		147.1
(-1.2)
P 		485.3
(3)
P 		118.7
(-1.5)
P 		484
avr 7.1
(-2.9) 		2.1
(-3) 		3.6
(-3) 		170.3
(-1) 		498.3
(3) 		103.7
(-1.8) 		496
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172118_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19391
Sequence Type Exemplar sequence
Representative Public ID Y57E12B.D NCBI
Target Description Y57E12B.D /REP_DB=WormBase Gene ID /WP=CE22642 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072356 NCBI Caenorhabditis elegans Y57E12B.1 (Y57E12B.1) mRNA, complete cds. 11/11 None
SNAP00000007824 ENSEMBL cdna:SNAP chromosome:CEL140:V:6951136:6951424:1 11/11 None
Y57E12B.1 ENSEMBL cdna:known chromosome:CEL140:V:6951136:6951424:1 gene:Y57E12B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072355 2/11 Cross Hyb Matching Probes A 
Y57E12B.4 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6951136-6951425(+) 100.0 100.0
chrV:6952162-6952448(-) 94.09 94.09
Public Domain and Genome References
Gene Title
Ensembl Y57E12B.1
Entrez Gene 190357 Entrez gene
SwissProt Q95XU9 EMBL-EBI
WormBase CE22642 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68535 Hypothetical protein Y57E12B.1 [Caenorhabditis elegans] ref|NP_504757.1| Y57E12B.1 [Caenorhabditis elegans] 1.0E-25
blast AAK68538 Hypothetical protein Y57E12B.4 [Caenorhabditis elegans] ref|NP_504756.2| Y57E12B.4 [Caenorhabditis elegans] 4.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504757.1 2 5-27,60-77
Y57E12B.1 2 5-27,60-77
SNAP00000007824 2 5-27,60-77
Sequence
Target Sequence 
>C. ELEGANS:172118_X_AT
aaatttttattgctgtcctctgccttgcaatcgttttctacatggtcacagctgttcctg
tagagttggtcgaagcttcggcttcatctaccgcatcatcggtcactaagagttcaaact
catctgatcctacacctgctagatctacagaaactacaacaaagtctggaaatggagtta
gcatgattttcactctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTTTATTGCTGTCCTCTGCCT 503 115 23 Antisense
CTGCCTTGCAATCGTTTTCTACATG 247 237 42 Antisense
TTCTACATGGTCACAGCTGTTCCTG 319 691 58 Antisense
CAGCTGTTCCTGTAGAGTTGGTCGA 610 179 71 Antisense
GGTCGAAGCTTCGGCTTCATCTACC 45 429 90 Antisense
TTCATCTACCGCATCATCGGTCACT 637 687 105 Antisense
CCGCATCATCGGTCACTAAGAGTTC 399 263 113 Antisense
AGAGTTCAAACTCATCTGATCCTAC 575 67 131 Antisense
ATCTGATCCTACACCTGCTAGATCT 658 33 144 Antisense
ACCTGCTAGATCTACAGAAACTACA 662 87 156 Antisense
TGGAGTTAGCATGATTTTCACTCTT 477 549 195 Antisense
Sequence Source Affymetrix Proprietary Database