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[172117_x_at]

Description Y38F2AR.O /REP_DB=WormBase Gene ID /WP=CE21636 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 44      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 11.7
(-2.3)
A 		46.1
(3)
A 		44.9
(2.8)
A 		6.8
(-3)
A 		39
B 3.7
(-3)
A 		43.6
(3)
A 		5.8
(-2.7)
A 		14.3
(-1.4)
A 		40
C 4.9
(-3)
A 		36.8
(3)
A 		5.1
(-3)
A 		6.3
(-2.7)
A 		32
avr 6.8
(-3) 		42.2
(3) 		18.6
(-1) 		9.1
(-2.6) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 69.8
(3)
A 		6.4
(-3)
A 		22.2
(-1.5)
A 		6.3
(-3)
A 		8.8
(-2.8)
A 		20.6
(-1.6)
A 		64
B 6.4
(-2.2)
A 		5.6
(-2.6)
A 		9.7
(-0.7)
A 		17.4
(3)
A 		4.8
(-3)
A 		8.4
(-1.3)
A 		13
C 7.9
(-2.6)
A 		13.2
(-2)
A 		52.4
(3)
A 		5.5
(-2.9)
A 		4.9
(-3)
A 		7.1
(-2.7)
A 		48
avr 28
(3) 		8.4
(-2.4) 		28.1
(3) 		9.7
(-2) 		6.2
(-3) 		12
(-1.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.3
(-1.1)
A 		10
(2)
A 		11.7
(3)
A 		1
(-3)
A 		11
B 1.2
(-3)
A 		10.8
(3)
A 		1.4
(-2.9)
A 		3
(-1.9)
A 		10
C 1.6
(-2.7)
A 		10.6
(3)
A 		1.8
(-2.6)
A 		1.1
(-3)
A 		10
avr 2.4
(-2.5) 		10.5
(3) 		5
(-0.8) 		1.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.9
(3)
A 		2.3
(-2.6)
A 		4.8
(-1.3)
A 		1.6
(-3)
A 		2.7
(-2.4)
A 		5
(-1.2)
A 		11
B 2.2
(-2.3)
A 		1.9
(-3)
A 		2.3
(-2.1)
A 		4.6
(3)
A 		2
(-2.8)
A 		3.1
(-0.3)
A 		3
C 2.9
(-2.1)
A 		4
(-1.6)
A 		13.3
(3)
A 		1.1
(-3)
A 		1.6
(-2.8)
A 		2.4
(-2.4)
A 		12
avr 6
(2) 		2.7
(-2.2) 		6.8
(3) 		2.4
(-2.6) 		2.1
(-3) 		3.5
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172117_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19357
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.O NCBI
Target Description Y38F2AR.O /REP_DB=WormBase Gene ID /WP=CE21636 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y38F2AR.O
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38F2AR.O Y38F2AR.O /REP_DB=WormBase Gene ID /WP=CE21636 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067801 11/11 Negative Strand Matching Probes A 
SNAP00000033671 11/11 Negative Strand Matching Probes None
GENEFINDER00000033676 11/11 Negative Strand Matching Probes None
Y38F2AR.12 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2411702-2411849(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172117_X_AT
aaacaaaattgccacacttttcactcccttttccttcaactcgccgagcttctccttcag
ctccaactcgtcgaccttcttctccacaacaatctgcaatccattgatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAAAATTGCCACACTTTTCACT 129 127 19 Antisense
AACAAAATTGCCACACTTTTCACTC 303 135 20 Antisense
ACAAAATTGCCACACTTTTCACTCC 139 113 21 Antisense
TTCTTCTCCACAACAATCTGCAATC 698 689 95 Antisense
CTTCTCCACAACAATCTGCAATCCA 236 221 97 Antisense
TTCTCCACAACAATCTGCAATCCAT 527 693 98 Antisense
TCTCCACAACAATCTGCAATCCATT 516 609 99 Antisense
CTCCACAACAATCTGCAATCCATTG 228 237 100 Antisense
TCCACAACAATCTGCAATCCATTGA 491 587 101 Antisense
CACAACAATCTGCAATCCATTGATC 288 193 103 Antisense
CAACAATCTGCAATCCATTGATCGT 67 191 105 Antisense
Sequence Source Affymetrix Proprietary Database