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[172114_at]

Description Y19D10A.A /REP_DB=WormBase Gene ID /WP=CE21443 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 03      4grp_total > 32      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 4.1
(-3)
A 		6.3
(-2.6)
A 		14
(-1.2)
A 		36.6
(3)
A 		33
B 3.3
(-3)
A 		15.1
(0.2)
A 		25.2
(3)
A 		20.2
(1.6)
P 		22
C 4.5
(-3)
A 		15.6
(0.1)
A 		26.2
(3)
A 		14.8
(-0.2)
A 		22
avr 4
(-3) 		12.3
(-0.5) 		21.8
(2.4) 		23.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 14
(-0.5)
A 		2.4
(-2.8)
A 		23
(1.2)
A 		32.1
(3)
A 		28.8
(2.4)
A 		1.5
(-3)
A 		31
B 39.1
(3)
A 		17.7
(-1)
A 		23.3
(0.1)
A 		18.5
(-0.8)
A 		6.7
(-3)
A 		25.8
(0.5)
P 		32
C 23.9
(-0.4)
A 		52.1
(3)
A 		2.7
(-3)
A 		29.5
(0.3)
A 		9.8
(-2.1)
A 		8.3
(-2.3)
A 		49
avr 25.7
(2.6) 		24.1
(1.9) 		16.3
(-1.2) 		26.7
(3) 		15.1
(-1.7) 		11.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-2.9)
A 		1.4
(-3)
A 		3.6
(0.3)
A 		5.4
(3)
A 		4
B 1
(-3)
A 		3.7
(0.4)
A 		5.8
(3)
A 		4.3
(1.1)
P 		5
C 1.5
(-3)
A 		4.5
(-0.6)
A 		9.1
(3)
A 		2.5
(-2.2)
A 		8
avr 1.3
(-3) 		3.2
(-0.7) 		6.2
(3) 		4.1
(0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.6
(-1.4)
A 		0.8
(-2.7)
A 		5
(0.3)
A 		8.1
(2.6)
A 		8.7
(3)
A 		0.4
(-3)
A 		8
B 13.6
(3)
A 		5.9
(-1.2)
A 		5.6
(-1.4)
A 		4.9
(-1.8)
A 		2.7
(-3)
A 		9.6
(0.8)
P 		11
C 8.9
(0.2)
A 		15.9
(3)
A 		0.7
(-3)
A 		5.9
(-0.9)
A 		3.2
(-2)
A 		2.8
(-2.2)
A 		15
avr 8.4
(3) 		7.5
(1.8) 		3.8
(-3) 		6.3
(0.3) 		4.9
(-1.6) 		4.3
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19532
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.A NCBI
Target Description Y19D10A.A /REP_DB=WormBase Gene ID /WP=CE21443 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071260 NCBI Caenorhabditis elegans Y19D10A.14 (Y19D10A.14) mRNA, complete cds. 11/11 None
Y19D10A.14 ENSEMBL cdna:known chromosome:CEL140:V:2408820:2409052:-1 gene:Y19D10A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2408819-2409052(-) 100.0 100.0
chrV:2517098-2517331(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D10A.14
Entrez Gene 189491 Entrez gene
SwissProt Q966D1 EMBL-EBI
WormBase CE21443 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503661 Y19D10A.14 [Caenorhabditis elegans] gb|AAK68414.1| Hypothetical protein Y19D10A.14 [Caenorhabditis elegans] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:172114_AT
gattcgggtatgtgggtgtcttggcagatgtgatctgccaaattttgccagaggtgctaa
ccaatttccggtacatataaataccgttaacttttttgatgtatctagaacatttttttt
cgattgtttttctgagaaatatgtacggcaaaacaggggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGGGTATGTGGGTGTCTTGGC 170 421 15 Antisense
TCGGGTATGTGGGTGTCTTGGCAGA 674 603 18 Antisense
GTGGGTGTCTTGGCAGATGTGATCT 263 489 26 Antisense
AGATGTGATCTGCCAAATTTTGCCA 42 69 40 Antisense
GCCAAATTTTGCCAGAGGTGCTAAC 270 279 51 Antisense
GAGGTGCTAACCAATTTCCGGTACA 123 375 65 Antisense
GCTAACCAATTTCCGGTACATATAA 31 293 70 Antisense
CCGTTAACTTTTTTGATGTATCTAG 363 263 98 Antisense
GTATCTAGAACATTTTTTTTCGATT 150 455 115 Antisense
TTTTTCGATTGTTTTTCTGAGAAAT 202 675 130 Antisense
GAAATATGTACGGCAAAACAGGGGG 178 361 150 Antisense
Sequence Source Affymetrix Proprietary Database