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[172112_x_at]

Description Y47D7A.10 /REP_DB=WormBase Gene ID /WP=CE24347 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 47.2
(-3)
A 		90.2
(-0.1)
M 		97.6
(0.4)
A 		136
(3)
A 		89
B 89.7
(0.9)
A 		113
(3)
A 		47.9
(-3)
A 		51.2
(-2.7)
A 		65
C 85.4
(-0.6)
A 		123.9
(3)
A 		66.9
(-2.4)
A 		60
(-3)
A 		64
avr 74.1
(-2.5) 		109
(3) 		70.8
(-3) 		82.4
(-1.2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 128.8
(3)
A 		36.3
(-3)
A 		53.7
(-1.9)
A 		44.1
(-2.5)
A 		74
(-0.6)
A 		46.5
(-2.3)
A 		93
B 52.9
(-1.4)
A 		104.4
(3)
P 		34.8
(-3)
A 		67.2
(-0.2)
A 		74.4
(0.4)
A 		54.2
(-1.3)
A 		70
C 56.3
(1.7)
A 		70.1
(3)
A 		67.9
(2.8)
A 		12.2
(-2.5)
A 		7.5
(-3)
A 		45.4
(0.6)
A 		63
avr 79.3
(3) 		70.3
(1.6) 		52.1
(-1.3) 		41.2
(-3) 		52
(-1.3) 		48.7
(-1.8) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 17.2
(-3)
A 		19.6
(-1.3)
M 		25.5
(3)
A 		19.9
(-1)
A 		8
B 28.6
(3)
A 		27.9
(2.8)
A 		11.1
(-2.9)
A 		10.9
(-3)
A 		18
C 28.3
(1.3)
A 		35.6
(3)
A 		23.3
(0.1)
A 		10.1
(-3)
A 		26
avr 24.7
(1.7) 		27.7
(3) 		20
(-0.3) 		13.6
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 23.7
(3)
A 		12.9
(-2.2)
A 		11.7
(-2.8)
A 		11.2
(-3)
A 		22.3
(2.3)
A 		11.3
(-3)
A 		13
B 18.4
(-0.7)
A 		34.7
(3)
P 		8.4
(-3)
A 		17.8
(-0.9)
A 		30.2
(2)
A 		20.2
(-0.3)
A 		26
C 20.9
(2.8)
A 		21.4
(3)
A 		17.3
(1.7)
A 		2.5
(-3)
A 		2.4
(-3)
A 		15.2
(1)
A 		19
avr 21
(2) 		23
(3) 		12.5
(-2) 		10.5
(-3) 		18.3
(0.7) 		15.6
(-0.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172112_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15757
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.10 NCBI
Target Description Y47D7A.10 /REP_DB=WormBase Gene ID /WP=CE24347 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071822 NCBI Caenorhabditis elegans Y47D7A.10 (Y47D7A.10) mRNA, complete cds. 11/11 None
Y47D7A.10 ENSEMBL cdna:known chromosome:CEL140:V:4425971:4426291:-1 gene:Y47D7A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071821 1/11 Cross Hyb Matching Probes A 
SNAP00000043264 1/11 Cross Hyb Matching Probes None
SNAP00000043266 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043278 1/11 Cross Hyb Matching Probes None
Y47D7A.9 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4425970-4426291(-) 96.53 100.0
chrV:4423442-4423761(-) 90.28 90.28
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.10
Entrez Gene 189986 Entrez gene
SwissProt Q9N3U5 EMBL-EBI
WormBase CE24347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60633 Hypothetical protein Y47D7A.10 [Caenorhabditis elegans] ref|NP_504223.1| Y47D7A.10 [Caenorhabditis elegans] 3.0E-18
blast AAF60634 Hypothetical protein Y47D7A.9 [Caenorhabditis elegans] ref|NP_504222.1| Y47D7A.9 [Caenorhabditis elegans] 6.0E-12
Sequence
Target Sequence 
>C. ELEGANS:172112_X_AT
tgcaagtcctcatcattttctctgccttcctggttgtccttgctcaattccgcaagcgtg
ccaaagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAAGTCCTCATCATTTTCTCTGC 354 577 14 Antisense
GTTGTCCTTGCTCAATTCCGCAAGC 649 435 46 Antisense
TTGTCCTTGCTCAATTCCGCAAGCG 128 709 47 Antisense
TCCTTGCTCAATTCCGCAAGCGTGC 609 591 50 Antisense
CCTTGCTCAATTCCGCAAGCGTGCC 193 269 51 Antisense
CTTGCTCAATTCCGCAAGCGTGCCA 209 219 52 Antisense
TTGCTCAATTCCGCAAGCGTGCCAA 575 699 53 Antisense
TGCTCAATTCCGCAAGCGTGCCAAA 257 581 54 Antisense
GCTCAATTCCGCAAGCGTGCCAAAG 89 303 55 Antisense
CTCAATTCCGCAAGCGTGCCAAAGC 468 227 56 Antisense
CAATTCCGCAAGCGTGCCAAAGCCC 101 181 58 Antisense
Sequence Source Affymetrix Proprietary Database