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[172111_x_at]

Description Y39G10AR.Z /REP_DB=WormBase Gene ID /WP=CE26530 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 25      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 80.6
(-1.5)
A 		28.3
(-3)
A 		33.1
(-2.9)
A 		240.1
(3)
A 		212
B 142.1
(3)
A 		30.6
(-2.2)
A 		13.3
(-3)
A 		103.8
(1.2)
A 		129
C 59
(-1.9)
A 		15.9
(-3)
A 		37.5
(-2.5)
A 		260.2
(3)
P 		244
avr 93.9
(-0.7) 		24.9
(-3) 		28
(-2.9) 		201.4
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 133.9
(3)
A 		37.3
(-1.6)
A 		85.1
(0.7)
A 		12.5
(-2.8)
A 		114.4
(2.1)
A 		7.7
(-3)
A 		126
B 88.3
(0.8)
A 		65.1
(-2.3)
A 		105.5
(3)
A 		77.7
(-0.6)
A 		59.4
(-3)
A 		59.8
(-2.9)
A 		46
C 30.5
(-2)
A 		148.8
(3)
A 		18.1
(-2.5)
A 		53.5
(-1)
A 		6.9
(-3)
A 		96.9
(0.8)
A 		142
avr 84.2
(3) 		83.7
(2.9) 		69.6
(0.6) 		47.9
(-3) 		60.2
(-1) 		54.8
(-1.9) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 29.3
(1.8)
A 		6.2
(-3)
A 		8.7
(-2.5)
A 		35.1
(3)
A 		29
B 45.3
(3)
A 		7.5
(-2.4)
A 		3.1
(-3)
A 		22.1
(-0.3)
A 		42
C 19.5
(-0.7)
A 		4.6
(-3)
A 		13.1
(-1.7)
A 		43.9
(3)
P 		39
avr 31.4
(2.5) 		6.1
(-3) 		8.3
(-2.5) 		33.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 24.7
(1.2)
A 		13.3
(-0.9)
A 		18.5
(0.1)
A 		3.2
(-2.8)
A 		34.5
(3)
A 		1.9
(-3)
A 		33
B 30.7
(3)
A 		21.7
(-2.3)
A 		25.6
(-0)
A 		20.6
(-3)
A 		24.1
(-0.9)
A 		22.3
(-2)
A 		10
C 11.3
(-1.7)
A 		45.4
(3)
A 		4.6
(-2.7)
A 		10.8
(-1.8)
A 		2.2
(-3)
A 		32.5
(1.2)
A 		43
avr 22.2
(1.2) 		26.8
(3) 		16.2
(-1.2) 		11.5
(-3) 		20.3
(0.5) 		18.9
(-0.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172111_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18684
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.Z NCBI
Target Description Y39G10AR.Z /REP_DB=WormBase Gene ID /WP=CE26530 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39G10AR.Z
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39G10AR.Z Y39G10AR.Z /REP_DB=WormBase Gene ID /WP=CE26530 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061102 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000011970 1/11 Cross Hyb Matching Probes None
F49B2.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172111_X_AT
gcctgagcctaagcctaagccaaagtctaagcctaagccaaagcctcaacctaagcctga
gcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTGAGCCTAAGCCTAAGCCAAAG 459 277 27 Antisense
GAGCCTAAGCCTAAGCCAAAGTCTA 445 385 31 Antisense
AAGCCTAAGCCAAAGTCTAAGCCTA 249 149 37 Antisense
AAGCCAAAGTCTAAGCCTAAGCCAA 252 149 43 Antisense
AAGTCTAAGCCTAAGCCAAAGCCTC 248 157 49 Antisense
GTCTAAGCCTAAGCCAAAGCCTCAA 515 467 51 Antisense
TAAGCCTAAGCCAAAGCCTCAACCT 138 639 54 Antisense
CCTAAGCCAAAGCCTCAACCTAAGC 93 267 58 Antisense
TAAGCCAAAGCCTCAACCTAAGCCT 84 639 60 Antisense
CCAAAGCCTCAACCTAAGCCTGAGC 404 275 64 Antisense
CAAAGCCTCAACCTAAGCCTGAGCC 60 193 65 Antisense
Sequence Source Affymetrix Proprietary Database