[Home] | [Total List]

[172110_x_at]

Description Y39G10AR.W /REP_DB=WormBase Gene ID /WP=CE26527 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 44      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 14.5
(-0.9)
A 		33.6
(3)
A 		4.1
(-3)
A 		4.3
(-3)
A 		30
B 30.8
(0.1)
A 		28.9
(-0.3)
A 		16.6
(-3)
A 		43.9
(3)
A 		27
C 38.2
(-0.4)
A 		60.3
(3)
A 		21.8
(-3)
A 		57
(2.5)
A 		39
avr 27.8
(0.1) 		40.9
(3) 		14.2
(-3) 		35.1
(1.7) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.9
(3)
A 		32.1
(0.6)
A 		49.4
(2.7)
A 		9.4
(-2.2)
A 		9.7
(-2.2)
A 		3
(-3)
A 		49
B 32.2
(2.5)
A 		24.6
(1.1)
A 		34.9
(3)
A 		18.5
(0)
A 		2
(-3)
A 		29.3
(2)
A 		33
C 25.8
(-0.4)
A 		11.7
(-2.6)
A 		47.8
(3)
A 		8.8
(-3)
A 		13.1
(-2.3)
A 		33
(0.7)
A 		39
avr 36.6
(1.8) 		22.8
(-0.6) 		44
(3) 		12.2
(-2.3) 		8.3
(-3) 		21.8
(-0.7) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.3
(1.2)
A 		7.3
(3)
A 		1.1
(-2.6)
A 		0.6
(-3)
A 		7
B 9.8
(3)
A 		7.1
(0.3)
A 		3.8
(-3)
A 		9.4
(2.6)
A 		6
C 12.6
(0.1)
A 		17.3
(3)
A 		7.6
(-3)
A 		9.6
(-1.8)
A 		10
avr 9.2
(1.7) 		10.6
(3) 		4.2
(-3) 		6.5
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.6
(2)
A 		11.4
(3)
A 		10.8
(2.7)
A 		2.4
(-2)
A 		2.9
(-1.8)
A 		0.7
(-3)
A 		11
B 11.2
(3)
A 		8.2
(1.3)
A 		8.5
(1.4)
A 		4.9
(-0.6)
A 		0.8
(-3)
A 		10.9
(2.8)
A 		10
C 9.6
(1.5)
A 		3.6
(-2)
A 		12.2
(3)
A 		1.8
(-3)
A 		4.2
(-1.6)
A 		11
(2.3)
A 		10
avr 10.1
(2.7) 		7.7
(0.9) 		10.5
(3) 		3
(-2.7) 		2.6
(-3) 		7.5
(0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172110_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18662
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.W NCBI
Target Description Y39G10AR.W /REP_DB=WormBase Gene ID /WP=CE26527 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39G10AR.W
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39G10AR.W Y39G10AR.W /REP_DB=WormBase Gene ID /WP=CE26527 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170824 11/11 Negative Strand Matching Probes A 
NM_170825 11/11 Negative Strand Matching Probes A 
SNAP00000028470 11/11 Negative Strand Matching Probes None
GENEFINDER00000028483 11/11 Negative Strand Matching Probes None
Y39G10AR.18a 11/11 Negative Strand Matching Probes A 
Y39G10AR.18b 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2384622-2384829(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172110_X_AT
tctttcaccgcattatcgactttcagcgcgtgctgcacgaattgccgaatctcgagctcg
acgtcttcagtggctccaccaccaccaccaccgtcggatttacggccaccagaggtgcca
cgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCACCGCATTATCGACTTTCA 556 615 43 Antisense
TTTCACCGCATTATCGACTTTCAGC 674 671 45 Antisense
ACCGCATTATCGACTTTCAGCGCGT 10 91 49 Antisense
ACTTTCAGCGCGTGCTGCACGAATT 163 103 61 Antisense
CAGCGCGTGCTGCACGAATTGCCGA 360 203 66 Antisense
GTGCTGCACGAATTGCCGAATCTCG 552 479 72 Antisense
GCACGAATTGCCGAATCTCGAGCTC 215 315 77 Antisense
CGAATTGCCGAATCTCGAGCTCGAC 649 253 80 Antisense
CCGTCGGATTTACGGCCACCAGAGG 449 89 133 Antisense
GATTTACGGCCACCAGAGGTGCCAC 214 421 139 Antisense
TTTACGGCCACCAGAGGTGCCACGT 314 11 141 Antisense
Sequence Source Affymetrix Proprietary Database