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[172109_x_at]

Description Y39G10AR.K /REP_DB=WormBase Gene ID /WP=CE21771 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 51      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 187.6
(2.3)
P 		205.7
(3)
P 		202.6
(2.9)
P 		56.4
(-3)
A 		149
B 152.7
(0.2)
P 		240.2
(3)
P 		184.7
(1.2)
P 		55.8
(-3)
A 		184
C 139.8
(-1.2)
P 		286.2
(3)
P 		248.5
(1.9)
P 		76.4
(-3)
A 		210
avr 160
(0.2) 		244
(3) 		211.9
(1.9) 		62.9
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 209.4
(-1.1)
P 		106.9
(-2.6)
P 		75.2
(-3)
A 		166
(-1.7)
P 		327.7
(0.5)
P 		502
(3)
P 		427
B 186.7
(-1.4)
P 		104.5
(-3)
P 		104.4
(-3)
A 		154.2
(-2)
P 		268.1
(0.2)
P 		409.2
(3)
P 		305
C 140.9
(-2.4)
P 		120.9
(-3)
A 		128.9
(-2.8)
P 		199.1
(-0.8)
A 		331.4
(3)
P 		332.1
(3)
P 		211
avr 179
(-1.5) 		110.8
(-2.8) 		102.8
(-3) 		173.1
(-1.6) 		309.1
(1) 		414.4
(3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 68.3
(3)
P 		44.6
(0.6)
P 		53
(1.5)
P 		8.3
(-3)
A 		60
B 48.7
(1.7)
P 		59.3
(3)
P 		42.8
(0.9)
P 		11.9
(-3)
A 		47
C 46.3
(-0.3)
P 		82.3
(2.6)
P 		86.6
(3)
P 		12.9
(-3)
A 		74
avr 54.4
(2.1) 		62.1
(3) 		60.8
(2.8) 		11
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 38.6
(-1.7)
P 		38
(-1.8)
P 		16.4
(-3)
A 		42.1
(-1.5)
P 		98.9
(1.7)
P 		122.2
(3)
P 		106
B 65
(-1.1)
P 		34.8
(-2.6)
P 		25.3
(-3)
A 		40.8
(-2.3)
P 		108.9
(0.9)
P 		152.6
(3)
P 		127
C 52.2
(-1.5)
P 		36.9
(-2.7)
A 		32.8
(-3)
P 		40
(-2.4)
A 		107.2
(2.7)
P 		111.2
(3)
P 		78
avr 51.9
(-1.4) 		36.6
(-2.3) 		24.8
(-3) 		41
(-2.1) 		105
(1.6) 		128.7
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172109_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18660
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.K NCBI
Target Description Y39G10AR.K /REP_DB=WormBase Gene ID /WP=CE21771 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170821 NCBI Caenorhabditis elegans Y39G10AR.12a (Y39G10AR.12) mRNA, complete cds. 11/11 None
GENEFINDER00000028479 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2297818:2297919:-1 11/11 None
Y39G10AR.12a ENSEMBL cdna:known chromosome:CEL140:I:2297308:2304393:-1 gene:Y39G10AR.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171786 2 1 NM_170821 172109_x_at (11), 175550_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2297817-2297919(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39G10AR.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast ABA18184 TPX2-related alternative variant a [Caenorhabditis elegans] ref|NP_740805.1| Y39G10AR.12a [Caenorhabditis elegans] gb|AAK39617.1| Hypothetical protein Y39G10AR.12a [Caenorhabditis elegans] 0.0
blast ABA18185 TPX2-related alternative variant b [Caenorhabditis elegans] ref|NP_740806.1| Y39G10AR.12b [Caenorhabditis elegans] gb|AAL32238.1| Hypothetical protein Y39G10AR.12b [Caenorhabditis elegans] 0.0
blast CAE60295 Hypothetical protein CBG03879 [Caenorhabditis briggsae] 4.0E-99
blast ABA18184 TPX2-related alternative variant a [Caenorhabditis elegans] ref|NP_740805.1| Y39G10AR.12a [Caenorhabditis elegans] gb|AAK39617.1| Hypothetical protein Y39G10AR.12a [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:172109_X_AT
catctgccggaggtcttcacggaattcgtgctccatcaaaggatcgttcgactcagaagc
cac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTGCCGGAGGTCTTCACGGAAT 570 211 17 Antisense
TCTGCCGGAGGTCTTCACGGAATTC 645 607 19 Antisense
GCCGGAGGTCTTCACGGAATTCGTG 452 281 22 Antisense
GAGGTCTTCACGGAATTCGTGCTCC 318 403 26 Antisense
GTCTTCACGGAATTCGTGCTCCATC 521 467 29 Antisense
CACGGAATTCGTGCTCCATCAAAGG 396 199 34 Antisense
GAATTCGTGCTCCATCAAAGGATCG 150 325 38 Antisense
TCGTGCTCCATCAAAGGATCGTTCG 519 603 42 Antisense
GCTCCATCAAAGGATCGTTCGACTC 425 297 46 Antisense
CCATCAAAGGATCGTTCGACTCAGA 577 269 49 Antisense
AAGGATCGTTCGACTCAGAAGCCAC 192 157 55 Antisense
Sequence Source Affymetrix Proprietary Database