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[172108_x_at]

Description Y39G10AR.C /REP_DB=WormBase Gene ID /WP=CE26521 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 61      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 13
(-3)
A 		20.8
(-1.7)
A 		48.3
(3)
A 		38.4
(1.3)
P 		35
B 19.9
(-1.7)
A 		27.6
(2)
A 		17.3
(-3)
A 		29.7
(3)
A 		12
C 41.6
(3)
P 		40
(2.7)
A 		5.8
(-3)
A 		26.6
(0.5)
A 		36
avr 24.8
(-2.2) 		29.5
(1.4) 		23.8
(-3) 		31.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 35.3
(3)
P 		15.2
(-1.3)
A 		7.5
(-3)
A 		21.5
(0)
P 		15.2
(-1.3)
A 		29.1
(1.7)
A 		28
B 0.9
(-3)
A 		21
(-0.1)
A 		42.9
(3)
A 		21.1
(-0.1)
P 		15.5
(-0.9)
P 		14.3
(-1.1)
A 		42
C 16.6
(-0.9)
A 		13.1
(-1.7)
A 		17.5
(-0.7)
A 		34.5
(3)
A 		23.2
(0.5)
A 		6.9
(-3)
A 		28
avr 17.6
(-2.2) 		16.4
(-3) 		22.6
(1) 		25.7
(3) 		18
(-2) 		16.8
(-2.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.7
(-2.9)
A 		4.5
(-3)
A 		12.6
(3)
A 		5.6
(-2.2)
P 		8
B 6.3
(1.9)
A 		6.8
(3)
A 		4
(-3)
A 		6.3
(1.9)
A 		3
C 13.8
(3)
P 		11.5
(1.8)
A 		2
(-3)
A 		4.5
(-1.7)
A 		12
avr 8.3
(3) 		7.6
(1.5) 		6.2
(-1.5) 		5.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.5
(2.3)
P 		5.4
(1.1)
A 		1.6
(-3)
A 		5.5
(1.3)
P 		4.6
(0.3)
A 		7.1
(3)
A 		6
B 0.3
(-3)
A 		7
(1)
A 		10.4
(3)
A 		5.6
(0.1)
P 		6.3
(0.6)
P 		5.3
(-0)
A 		10
C 6.1
(1.4)
A 		4
(-1)
A 		4.5
(-0.5)
A 		6.9
(2.3)
A 		7.5
(3)
A 		2.3
(-3)
A 		5
avr 4.3
(-3) 		5.5
(1) 		5.5
(1) 		6
(2.7) 		6.1
(3) 		4.9
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172108_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18653
Sequence Type Exemplar sequence
Representative Public ID Y39G10AR.C NCBI
Target Description Y39G10AR.C /REP_DB=WormBase Gene ID /WP=CE26521 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058568
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028478 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2377619:2379684:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058568 5/11 Cross Hyb Matching Probes None
SNAP00000028470 5/11 Cross Hyb Matching Probes None
Y39G10AR.17 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2377618-2381852(-) 98.89 100.0
Sequence
Target Sequence 
>C. ELEGANS:172108_X_AT
aaacggcatttttcagtaaagagataaaaaaaaaaatattaaaaaaacggaattttttta
gtgaaaagctttttttttccgaaaaatcacttttttttgagaaaaaataccggaaaacgg
aaaatcgaaaaactaaaaatttcgatttctcagcaaaaaaaaactcgattttttttgaaa
gattccccaaaattttggtcatttttcttatttttagacgttatttgttttgttataaac
ccccacctatgcaacatttcaatgctccaccgcccccaatggctccgtatcagcaccagg
ctcctccatcaatcgtccttccaccggtgaacgttccacctccaccgattggcgtccgaa
ttgatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGGCATTTTTCAGTAAAGAGAT 445 123 1235 Antisense
ACGGCATTTTTCAGTAAAGAGATAA 627 85 1237 Antisense
AACTAAAAATTTCGATTTCTCAGCA 15 141 1365 Antisense
TAAAAATTTCGATTTCTCAGCAAAA 311 639 1368 Antisense
GATTTCTCAGCAAAAAAAAACTCGA 549 425 1378 Antisense
TGGTCATTTTTCTTATTTTTAGACG 364 551 1430 Antisense
CCCCCACCTATGCAACATTTCAATG 65 261 1474 Antisense
CCACCTATGCAACATTTCAATGCTC 682 273 1477 Antisense
TATGCAACATTTCAATGCTCCACCG 413 657 1482 Antisense
CACCGATTGGCGTCCGAATTGATAC 131 201 1577 Antisense
ACCGATTGGCGTCCGAATTGATACT 211 89 1578 Antisense
Sequence Source Affymetrix Proprietary Database