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[172107_x_at]

Description Y54F10AM.E /REP_DB=WormBase Gene ID /WP=CE26173 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 23      6grp_total > 45      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17047
1 2 3 4 range
A 2473.5
(-2.4)
P 		982.3
(-3)
P 		868.7
(-3)
P 		17608.4
(3)
P 		16740
B 3705.9
(-0.4)
P 		1023.9
(-2.9)
P 		910.5
(-3)
P 		7451.4
(3)
P 		6541
C 2995.9
(-2)
P 		694.9
(-2.9)
P 		561.9
(-3)
P 		15375
(3)
P 		14813
avr 3058.4
(-1.9) 		900.4
(-2.9) 		780.4
(-3) 		13478.3
(3) 		12698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5644
1 2 3 4 5 6 range
A 1710
(-1.8)
P 		1111
(-2.5)
P 		5928.1
(3)
P 		645.5
(-3)
P 		2453.6
(-0.9)
P 		2231.7
(-1.2)
P 		5283
B 2108
(1.3)
P 		2420.5
(2.7)
P 		1915.2
(0.4)
P 		1489.5
(-1.6)
P 		1200.2
(-3)
P 		2476.3
(3)
P 		1276
C 660.1
(-2.6)
P 		5736.2
(3)
P 		930.7
(-2.3)
P 		1514.9
(-1.6)
P 		284
(-3)
P 		2620.7
(-0.4)
P 		5452
avr 1492.7
(-2.1) 		3089.2
(3) 		2924.7
(2.5) 		1216.6
(-3) 		1312.6
(-2.7) 		2442.9
(0.9) 		1873
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2397
1 2 3 4 range
A 900.6
(-1.3)
P 		213.2
(-3)
P 		227.1
(-3)
P 		2577.5
(3)
P 		2364
B 1181.8
(1.2)
P 		252.9
(-2.8)
P 		211
(-3)
P 		1587.9
(3)
P 		1377
C 991.7
(-1)
P 		199.8
(-3)
P 		195.8
(-3)
P 		2592.5
(3)
P 		2397
avr 1024.7
(-0.6) 		222
(-3) 		211.3
(-3) 		2252.6
(3) 		2041

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1658
1 2 3 4 5 6 range
A 315.2
(-2.2)
P 		395.1
(-1.8)
P 		1291
(3)
P 		163.7
(-3)
P 		740.4
(0.1)
P 		543.3
(-1)
P 		1127
B 733.5
(0.8)
P 		805.7
(1.7)
P 		465.1
(-2.2)
P 		394.5
(-3)
P 		487.6
(-1.9)
P 		923.4
(3)
P 		529
C 244.7
(-2.4)
P 		1750.3
(3)
P 		236.9
(-2.5)
P 		304.7
(-2.2)
P 		91.9
(-3)
P 		877.3
(-0.2)
P 		1658
avr 431.1
(-1.8) 		983.7
(3) 		664.3
(0.2) 		287.6
(-3) 		440
(-1.7) 		781.3
(1.3) 		696
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172107_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18949
Sequence Type Exemplar sequence
Representative Public ID Y54F10AM.E NCBI
Target Description Y54F10AM.E /REP_DB=WormBase Gene ID /WP=CE26173 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065169
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034929 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2502067:2502756:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 4/11 Cross Hyb Matching Probes A 
NM_075710 2/11 Cross Hyb Matching Probes None
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_078408 2/11 Cross Hyb Matching Probes A 
NM_073039 5/11 Cross Hyb Matching Probes A 
NM_061393 4/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 3/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 2/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 5/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 5/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007905 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 6/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 2/11 Cross Hyb Matching Probes None
T02H6.3 4/11 Cross Hyb Matching Probes A 
Y116A8C.41 4/11 Cross Hyb Matching Probes A 
Y54B9A.1 5/11 Cross Hyb Matching Probes A 
B0310.4 2/11 Cross Hyb Matching Probes None
C24A3.1 1/11 Cross Hyb Matching Probes A 
C53C11.4 2/11 Cross Hyb Matching Probes A 
NM_065168 11/11 Negative Strand Matching Probes A 
Y54F10AM.7 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2504019-2507958(-) 69.23 69.23
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39963 Hypothetical protein T02H6.3 [Caenorhabditis elegans] ref|NP_493794.1| T02H6.3 [Caenorhabditis elegans] 6.0E-87
blast CAB55158 Hypothetical protein Y116A8C.41 [Caenorhabditis elegans] ref|NP_503041.1| Y116A8C.41 [Caenorhabditis elegans] 2.0E-80
blast T31576 hypothetical protein Y105C5A.s - Caenorhabditis elegans 5.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.2E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.5E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.4E-9
Sequence
Target Sequence 
>C. ELEGANS:172107_X_AT
ctgcgagatcttcgtggcgagacccatcgtggcgagacccatcgtggcgagacccatcgt
ggtgagacctatcgtggaaagacccatcgtggtgagacccatcgtggcgagacccatcgt
ggtgagacccatcgtggtgagacccatcgtggtgagacccaccgtggtgagacccttcgt
ggtgagacccatcgtggcgagacccatcgtggtgagacccatcgtggtgagacccatcgt
ggtgagacccaccgtggtgagacccatcgtggtgagacctatcgtggaaagacccatcgt
ggtgagacccatcgtggcgagacccatcgtggtgagacccatcgtggtgagacccatcgt
ggtgagacccaccgtggtgagacccttcgtggtgaaacccatcgtggcgagacccatcgt
ggtgagacccatcgtggtgagacccatcgtggtgagacccaccgtggtgagacccatcgt
ggcgaggcccatcgtggtgagacccaccgtggtgagacccatcgtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCGAGATCTTCGTGGCGAGACCC 434 237 1744 Antisense
GACCCATCGTGGTGAGACCTATCGT 572 381 1794 Antisense
CCATCGTGGTGAGACCCATCGTGGC 120 271 1827 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 539 551 1908 Antisense
ATCGTGGTGAGACCCATCGTGGTGA 459 35 1964 Antisense
GAGACCCATCGTGGTGAGACCTATC 176 395 2002 Antisense
GAAAGACCCATCGTGGTGAGACCCA 98 361 2030 Antisense
CCATCGTGGTGAGACCCATCGTGGT 128 271 2082 Antisense
TGAGACCCTTCGTGGTGAAACCCAT 447 547 2121 Antisense
CCACCGTGGTGAGACCCATCGTGGC 282 273 2202 Antisense
CCACCGTGGTGAGACCCATCGTGGT 284 273 2247 Antisense
Sequence Source Affymetrix Proprietary Database