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[172106_x_at]

Description Y54F10AM.G /REP_DB=WormBase Gene ID /WP=CE26175 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 33      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 32      6grp_total > 10      4grp_total > 04      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7878
1 2 3 4 range
A 1142.1
(-2.2)
P 		429
(-3)
P 		544
(-2.9)
P 		6078.7
(3)
P 		5650
B 1921.1
(0.3)
P 		554.8
(-3)
P 		624.4
(-2.8)
P 		3070.9
(3)
P 		2516
C 1547.1
(-2.1)
P 		416.6
(-3)
P 		385.1
(-3)
P 		8262.9
(3)
P 		7878
avr 1536.8
(-1.8) 		466.8
(-3) 		517.8
(-2.9) 		5804.2
(3) 		5337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3722
1 2 3 4 5 6 range
A 743
(-1.9)
P 		628
(-2.1)
P 		3150.3
(3)
P 		259
(-2.9)
P 		1327.1
(-0.7)
P 		196.1
(-3)
P 		2954
B 1136.9
(0.4)
P 		1707.5
(3)
P 		993.5
(-0.3)
P 		555.6
(-2.3)
P 		640.5
(-1.9)
P 		410
(-3)
P 		1298
C 404.7
(-2.6)
P 		3875.6
(3)
P 		286.9
(-2.8)
P 		677.9
(-2.2)
P 		153.3
(-3)
P 		469.1
(-2.5)
P 		3722
avr 761.5
(-1.6) 		2070.4
(3) 		1476.9
(0.9) 		497.5
(-2.5) 		707
(-1.8) 		358.4
(-3) 		1712
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1300
1 2 3 4 range
A 415.9
(-0.6)
P 		93.1
(-3)
P 		142.2
(-2.6)
P 		889.8
(3)
P 		797
B 612.6
(2.5)
P 		137
(-3)
P 		144.7
(-2.9)
P 		654.4
(3)
P 		517
C 512.1
(-1.2)
P 		119.8
(-3)
P 		134.2
(-2.9)
P 		1393.3
(3)
P 		1274
avr 513.5
(-0.2) 		116.6
(-3) 		140.4
(-2.8) 		979.2
(3) 		863

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1135
1 2 3 4 5 6 range
A 137
(-2.2)
P 		223.3
(-1.3)
P 		686.1
(3)
P 		65.7
(-2.8)
P 		400.5
(0.3)
P 		47.7
(-3)
P 		638
B 395.6
(0.5)
P 		568.3
(3)
P 		241.3
(-1.7)
P 		147.2
(-3)
P 		260.2
(-1.4)
P 		152.9
(-2.9)
P 		421
C 150
(-2.5)
P 		1182.6
(3)
P 		73
(-2.9)
P 		136.3
(-2.5)
P 		49.6
(-3)
P 		157
(-2.4)
P 		1133
avr 227.5
(-1.8) 		658.1
(3) 		333.5
(-0.6) 		116.4
(-3) 		236.8
(-1.7) 		119.2
(-3) 		542
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172106_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18919
Sequence Type Exemplar sequence
Representative Public ID Y54F10AM.G NCBI
Target Description Y54F10AM.G /REP_DB=WormBase Gene ID /WP=CE26175 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065168 NCBI Caenorhabditis elegans Y54F10AM.7 (Y54F10AM.7) mRNA, complete cds. 11/11 None
Y54F10AM.7 ENSEMBL cdna:known chromosome:CEL140:III:2502157:2502711:1 gene:Y54F10AM.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071316 1/11 Cross Hyb Matching Probes A 
SNAP00000010958 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002760 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029225 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029150 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013499 1/11 Cross Hyb Matching Probes None
SNAP00000017447 2/11 Cross Hyb Matching Probes None
GENEFINDER00000017471 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024356 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 1/11 Cross Hyb Matching Probes None
SNAP00000042947 2/11 Cross Hyb Matching Probes None
GENEFINDER00000042954 2/11 Cross Hyb Matching Probes None
SNAP00000043062 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013906 2/11 Cross Hyb Matching Probes None
SNAP00000013903 1/11 Cross Hyb Matching Probes None
SNAP00000031963 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031978 2/11 Cross Hyb Matching Probes None
SNAP00000019190 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019201 2/11 Cross Hyb Matching Probes None
SNAP00000019039 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019053 2/11 Cross Hyb Matching Probes None
SNAP00000022923 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022940 1/11 Cross Hyb Matching Probes None
SNAP00000028756 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028763 1/11 Cross Hyb Matching Probes None
SNAP00000031107 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031114 2/11 Cross Hyb Matching Probes None
SNAP00000035781 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035787 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035790 1/11 Cross Hyb Matching Probes None
SNAP00000006574 1/11 Cross Hyb Matching Probes None
SNAP00000025925 2/11 Cross Hyb Matching Probes None
GENEFINDER00000025928 2/11 Cross Hyb Matching Probes None
SNAP00000008037 1/11 Cross Hyb Matching Probes None
SNAP00000032397 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032410 2/11 Cross Hyb Matching Probes None
W02H5.5 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000034929 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y54F10AM.7
Entrez Gene 190265 Entrez gene
SwissProt Q9BL08 EMBL-EBI
WormBase CE26175 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.4E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.1E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497569.1 5 5-27,47-69,81-103,118-140,147-169
Y54F10AM.7 5 5-27,47-69,81-103,118-140,147-169
Sequence
Target Sequence 
>C. ELEGANS:172106_X_AT
gccacgatgggtttcaccacgaagggtctcaccacggtgggtctcaccacgatgggtctc
accacgatgggtctcaccacgatgggtctcgccacgatgggtctcaccacgatgggtctt
tccacgataggtctcaccacgatgggtctcaccacggtgggtctcaccacgatgggtctc
accacgatgggtctcaccacgatgggtctcgccacgatgggtctcaccacgaagggtctc
accacggtgggtctcaccacgatgggtctcaccacgatgggtctcaccacgatgggtctc
gccacgatgggtctcaccacgatgggtctttccacgataggtctcaccacgatgggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGATGGGTTTCACCACGAAGG 618 279 127 Antisense
GATGGGTTTCACCACGAAGGGTCTC 207 409 132 Antisense
TGGGTTTCACCACGAAGGGTCTCAC 670 551 134 Antisense
ACCACGATGGGTCTTTCCACGATAG 151 85 232 Antisense
GATGGGTCTTTCCACGATAGGTCTC 208 409 237 Antisense
TTTCCACGATAGGTCTCACCACGAT 43 669 245 Antisense
CCACGATAGGTCTCACCACGATGGG 327 275 248 Antisense
CACGATGGGTCTTTCCACGATAGGT 425 199 444 Antisense
ACGATGGGTCTTTCCACGATAGGTC 677 93 445 Antisense
TCCACGATAGGTCTCACCACGATGG 686 585 457 Antisense
ACGATAGGTCTCACCACGATGGGTC 676 93 460 Antisense
Sequence Source Affymetrix Proprietary Database