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[172105_x_at]

Description Y39G10BM.E /REP_DB=WormBase Gene ID /WP=CE25271 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 80.3
(-3)
P 		82.4
(-2.9)
A 		89.6
(-2.5)
P 		182.5
(3)
A 		102
B 48.7
(-3)
A 		66.1
(-0.7)
A 		94.5
(3)
A 		92.5
(2.7)
A 		46
C 63.2
(-2.5)
A 		96
(-0.9)
A 		51.8
(-3)
A 		177.7
(3)
P 		126
avr 64.1
(-3) 		81.5
(-1.8) 		78.6
(-2) 		150.9
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1738
1 2 3 4 5 6 range
A 95.8
(-2.7)
A 		68
(-2.8)
A 		41.5
(-3)
A 		111.7
(-2.6)
P 		766.3
(1.4)
P 		1037
(3)
P 		996
B 57.3
(-3)
A 		68.9
(-2.9)
A 		57.8
(-3)
A 		99.7
(-2.8)
A 		1130.2
(2.5)
P 		1223.9
(3)
P 		1167
C 39.1
(-2.9)
A 		106.5
(-2.7)
P 		24.2
(-3)
A 		114.8
(-2.7)
P 		1089.8
(0.7)
P 		1762.6
(3)
P 		1738
avr 64.1
(-2.9) 		81.1
(-2.8) 		41.2
(-3) 		108.7
(-2.7) 		995.4
(1.4) 		1341.2
(3) 		1300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 29.2
(3)
P 		17.9
(-3)
A 		23.4
(-0.1)
P 		26.7
(1.7)
A 		11
B 15.5
(-3)
A 		16.3
(-2.3)
A 		21.9
(3)
A 		19.7
(0.9)
A 		6
C 20.9
(-1.6)
A 		27.6
(1.8)
A 		18.1
(-3)
A 		30
(3)
P 		12
avr 21.9
(-1.4) 		20.6
(-3) 		21.1
(-2.4) 		25.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 17.7
(-2.8)
A 		24.2
(-2.6)
A 		9
(-3)
A 		28.3
(-2.5)
P 		231.2
(2.5)
P 		252.5
(3)
P 		244
B 19.9
(-2.9)
A 		22.9
(-2.9)
A 		14
(-3)
A 		26.4
(-2.8)
A 		459.2
(3)
P 		456.4
(3)
P 		445
C 14.5
(-2.9)
A 		32.5
(-2.7)
P 		6.2
(-3)
A 		23.1
(-2.8)
P 		352.6
(0.6)
P 		590
(3)
P 		584
avr 17.4
(-2.9) 		26.5
(-2.8) 		9.7
(-3) 		25.9
(-2.8) 		347.7
(1.8) 		433
(3) 		423
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172105_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18706
Sequence Type Exemplar sequence
Representative Public ID Y39G10BM.E NCBI
Target Description Y39G10BM.E /REP_DB=WormBase Gene ID /WP=CE25271 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024816 ENSEMBL cdna:SNAP chromosome:CEL140:I:2178364:2179883:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069433 1/11 Cross Hyb Matching Probes None
NM_068370 1/11 Cross Hyb Matching Probes A 
NM_069448 2/11 Cross Hyb Matching Probes A 
NM_068310 1/11 Cross Hyb Matching Probes A 
NM_068312 1/11 Cross Hyb Matching Probes A 
NM_068313 1/11 Cross Hyb Matching Probes A 
NM_068351 1/11 Cross Hyb Matching Probes A 
NM_068354 1/11 Cross Hyb Matching Probes A 
NM_068359 1/11 Cross Hyb Matching Probes A 
NM_068377 1/11 Cross Hyb Matching Probes A 
NM_068379 1/11 Cross Hyb Matching Probes A 
NM_062743 1/11 Cross Hyb Matching Probes A 
NM_062748 1/11 Cross Hyb Matching Probes A 
NM_062753 1/11 Cross Hyb Matching Probes A 
NM_069321 2/11 Cross Hyb Matching Probes A 
NM_069339 1/11 Cross Hyb Matching Probes A 
NM_069341 2/11 Cross Hyb Matching Probes A 
NM_069358 1/11 Cross Hyb Matching Probes A 
NM_069359 2/11 Cross Hyb Matching Probes A 
NM_069361 2/11 Cross Hyb Matching Probes A 
NM_069380 1/11 Cross Hyb Matching Probes A 
NM_068372 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000024829 8/11 Cross Hyb Matching Probes None
SNAP00000031245 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 1/11 Cross Hyb Matching Probes None
SNAP00000041369 1/11 Cross Hyb Matching Probes None
SNAP00000041374 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041398 1/11 Cross Hyb Matching Probes None
SNAP00000002639 1/11 Cross Hyb Matching Probes None
SNAP00000002641 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 1/11 Cross Hyb Matching Probes None
SNAP00000004243 1/11 Cross Hyb Matching Probes None
SNAP00000004244 2/11 Cross Hyb Matching Probes None
SNAP00000004246 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004265 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004273 2/11 Cross Hyb Matching Probes None
SNAP00000005864 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005869 1/11 Cross Hyb Matching Probes None
SNAP00000006004 1/11 Cross Hyb Matching Probes None
SNAP00000006006 1/11 Cross Hyb Matching Probes None
SNAP00000006011 1/11 Cross Hyb Matching Probes None
SNAP00000006013 1/11 Cross Hyb Matching Probes None
SNAP00000006015 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 1/11 Cross Hyb Matching Probes None
SNAP00000007231 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 1/11 Cross Hyb Matching Probes None
SNAP00000023386 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023395 2/11 Cross Hyb Matching Probes None
SNAP00000029404 1/11 Cross Hyb Matching Probes None
SNAP00000029405 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 1/11 Cross Hyb Matching Probes None
SNAP00000034129 1/11 Cross Hyb Matching Probes None
SNAP00000034134 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034137 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034140 1/11 Cross Hyb Matching Probes None
SNAP00000041533 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 1/11 Cross Hyb Matching Probes None
SNAP00000043472 1/11 Cross Hyb Matching Probes None
SNAP00000043475 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043489 2/11 Cross Hyb Matching Probes None
K05F1.2 1/11 Cross Hyb Matching Probes A 
ZK1248.6 1/11 Cross Hyb Matching Probes A 
ZK1248.4 1/11 Cross Hyb Matching Probes A 
C09B9.6 1/11 Cross Hyb Matching Probes A 
R13H9.2 1/11 Cross Hyb Matching Probes A 
R13H9.4 1/11 Cross Hyb Matching Probes A 
Y59E9AR.7 1/11 Cross Hyb Matching Probes A 
Y59E9AR.1 1/11 Cross Hyb Matching Probes A 
F36H12.7 1/11 Cross Hyb Matching Probes A 
F36H12.6 1/11 Cross Hyb Matching Probes None
ZK354.5 1/11 Cross Hyb Matching Probes A 
ZK354.4 1/11 Cross Hyb Matching Probes A 
ZK354.10 1/11 Cross Hyb Matching Probes None
ZK354.11 1/11 Cross Hyb Matching Probes A 
ZK354.1 1/11 Cross Hyb Matching Probes A 
ZK1251.6 2/11 Cross Hyb Matching Probes A 
T13F2.10 1/11 Cross Hyb Matching Probes A 
T13F2.11 2/11 Cross Hyb Matching Probes A 
K07F5.1 1/11 Cross Hyb Matching Probes A 
K07F5.2 2/11 Cross Hyb Matching Probes A 
K07F5.3 2/11 Cross Hyb Matching Probes A 
F32B6.6 1/11 Cross Hyb Matching Probes A 
C04G2.3 1/11 Cross Hyb Matching Probes None
K08F4.8 1/11 Cross Hyb Matching Probes A 
K08F4.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2179481-2179883(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94283 Hypothetical protein K07F5.3 [Caenorhabditis elegans] emb|CAA94278.1| Hypothetical protein K07F5.2 [Caenorhabditis elegans] emb|CAA92502.1| Hypothetical protein ZK1251.6 [Caenorhabditis elegans] emb|CAA94674.1| Hypothetical protein C04G2.4 [Caenorhabditis elegans] ref|NP_501834.1| Major Sperm Protein family member (msp-36) [Caenorhabditis elegans] ref|NP_501762.1| Major Sperm Protein family member (msp-56) [Caenorhabditis elegans] ref|NP_501760.1| Major Sperm Protein family member (msp-10) [Caenorhabditis elegans] ref|NP_501722.1| Major Sperm Protein family member (msp-76) [Caenorhabditis elegans] sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 (MSP) emb|CAE59492.1| Hypothetical protein CBG02877 [Caenorhabditis briggsae] emb|CAE59433.1| Hypothetical protein CBG02806 [Caenorhabditis briggsae] emb|CAE59411.1| Hypothetical protein CBG02775 [Caenorhabditis briggsae] 8.0E-46
blast CAE59419 Hypothetical protein CBG02788 [Caenorhabditis briggsae] 8.0E-46
blast CAE60837 Hypothetical protein CBG04546 [Caenorhabditis briggsae] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.4E-26
Sequence
Target Sequence 
>C. ELEGANS:172105_X_AT
aatccgtcctaccaggagacatccaaacccaaccaaacgcgaagatcgtcttcaatgctc
catacgatgacaagcacacctttcacatcaagatgatcaactcatcgtctcgtcgtattg
gatacggtatcaagaccaccaatatgaagagacttggagttgatccaccatgtggagttc
tcgacccaaaggaagctgtgcttcttgctgtttcctgcgatgcttttgccttcggacaag
aggataccaacaacgaccgtgtcactgttgagtggaccaacacatcgagtacaatccata
ggatgtgtgaactgggtttcttaacaataaacttttttcttaacaattgctcctcgaatc
agctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGTCCTACCAGGAGACATCCA 674 167 20 Antisense
GAAGATCGTCTTCAATGCTCCATAC 129 339 60 Antisense
CAAGCACACCTTTCACATCAAGATG 475 185 90 Antisense
AGATGATCAACTCATCGTCTCGTCG 119 67 110 Antisense
ACCATGTGGAGTTCTCGACCCAAAG 508 83 186 Antisense
GATGCTTTTGCCTTCGGACAAGAGG 57 413 238 Antisense
GATACCAACAACGACCGTGTCACTG 143 425 262 Antisense
GTGGACCAACACATCGAGTACAATC 164 491 291 Antisense
GGATGTGTGAACTGGGTTTCTTAAC 427 513 320 Antisense
CTTTTTTCTTAACAATTGCTCCTCG 697 209 351 Antisense
TAACAATTGCTCCTCGAATCAGCTG 377 639 360 Antisense
Sequence Source Affymetrix Proprietary Database