[Home] | [Total List]

[172104_x_at]

Description Y69A2AR.AA /REP_DB=WormBase Gene ID /WP=CE22805 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 21.5
(-2)
A 		34.8
(0.6)
A 		46.8
(3)
A 		16.2
(-3)
A 		31
B 37.7
(3)
A 		35.5
(2.5)
A 		33.6
(2)
A 		13.6
(-3)
A 		24
C 17
(-3)
A 		53.6
(3)
A 		34.7
(-0.1)
A 		30.9
(-0.7)
A 		37
avr 25.4
(-1.5) 		41.3
(3) 		38.4
(2.2) 		20.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 46.8
(3)
A 		30.7
(0.8)
A 		26.2
(0.2)
A 		2.4
(-3)
A 		37.6
(1.8)
A 		12.7
(-1.6)
A 		44
B 33.4
(1.1)
A 		43.5
(3)
A 		22.9
(-0.8)
A 		17.8
(-1.8)
A 		29.8
(0.5)
P 		11.1
(-3)
A 		32
C 40.9
(1.9)
P 		6.6
(-2.4)
A 		1.8
(-3)
A 		49.5
(3)
A 		37
(1.4)
M 		17.3
(-1.1)
A 		48
avr 40.4
(3) 		26.9
(-0) 		17
(-2.3) 		23.2
(-0.9) 		34.8
(1.7) 		13.7
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.8
(0.3)
A 		7.6
(0.2)
A 		12.2
(3)
A 		2.4
(-3)
A 		10
B 12
(3)
A 		8.8
(0.9)
A 		7.8
(0.2)
A 		2.9
(-3)
A 		9
C 5.6
(-2.8)
A 		15.4
(3)
A 		12.1
(1.1)
A 		5.2
(-3)
A 		10
avr 8.5
(1.2) 		10.6
(2.9) 		10.7
(3) 		3.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.6
(1.4)
A 		10.9
(2.7)
A 		5.7
(-0.2)
A 		0.6
(-3)
A 		11.4
(3)
A 		3.1
(-1.6)
A 		11
B 11.6
(1.3)
A 		14.5
(3)
A 		5.6
(-2.1)
A 		4.7
(-2.7)
A 		12.1
(1.6)
P 		4.1
(-3)
A 		10
C 15.1
(3)
P 		2
(-2.4)
A 		0.5
(-3)
A 		9.9
(0.9)
A 		12
(1.7)
M 		5.8
(-0.8)
A 		15
avr 11.8
(3) 		9.1
(0.9) 		3.9
(-3) 		5.1
(-2.1) 		11.8
(3) 		4.3
(-2.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172104_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19307
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.AA NCBI
Target Description Y69A2AR.AA /REP_DB=WormBase Gene ID /WP=CE22805 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000018816 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2585099:2601395:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067828 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000018837 1/11 Cross Hyb Matching Probes None
Y69A2AR.8 1/11 Cross Hyb Matching Probes A 
NM_067829 11/11 Negative Strand Matching Probes A 
Y69A2AR.27 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2597719-2597932(+) 55.4 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04287 Hypothetical protein F35E2.6 [Caenorhabditis elegans] ref|NP_492984.1| F35E2.6 [Caenorhabditis elegans] 0.0
blast CAB04285 Hypothetical protein F35E2.7 [Caenorhabditis elegans] ref|NP_492985.1| F35E2.7 [Caenorhabditis elegans] 1.0E-176
blast NP_500227 Y69A2AR.10 [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 7.7E-79
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.7E-4
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.5E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000018816 5 49-71,143-162,223-240,247-269,1452-1474
Sequence
Target Sequence 
>C. ELEGANS:172104_X_AT
atggctgaggtgggattggatcaatcccaggcaatgggtccaggcaggatgagcgaggaa
aaggtccccagaaagagcaagaagagcaagaaggggaacgacggcaaggacaataaggag
aagaaggaaaagccgaagaaaggagaggatgagaagactaaggaaggatccaagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTGAGGTGGGATTGGATCAAT 543 51 13 Antisense
GATTGGATCAATCCCAGGCAATGGG 124 435 26 Antisense
AATCCCAGGCAATGGGTCCAGGCAG 174 167 35 Antisense
GGCAATGGGTCCAGGCAGGATGAGC 646 533 42 Antisense
GGGTCCAGGCAGGATGAGCGAGGAA 413 497 48 Antisense
GATGAGCGAGGAAAAGGTCCCCAGA 439 405 60 Antisense
GAAAAGGTCCCCAGAAAGAGCAAGA 58 353 70 Antisense
GAGCAAGAAGGGGAACGACGGCAAG 351 389 96 Antisense
GGGGAACGACGGCAAGGACAATAAG 600 497 105 Antisense
ACGACGGCAAGGACAATAAGGAGAA 674 91 110 Antisense
GAAGACTAAGGAAGGATCCAAGCAG 593 339 165 Antisense
Sequence Source Affymetrix Proprietary Database