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[172102_x_at]

Description ZK105.G_rc /REP_DB=WormBase Gene ID /WP=CE23452 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 32      6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9473
1 2 3 4 range
A 1262.4
(-2.5)
P 		438.7
(-3)
P 		475.8
(-3)
P 		9771.8
(3)
P 		9333
B 1887.6
(-0.8)
P 		544.2
(-2.9)
P 		471.6
(-3)
P 		4421.1
(3)
P 		3950
C 1550
(-2.2)
P 		642.6
(-2.8)
P 		298.7
(-3)
P 		9209.6
(3)
P 		8911
avr 1566.7
(-2.1) 		541.8
(-2.9) 		415.4
(-3) 		7800.8
(3) 		7385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3782
1 2 3 4 5 6 range
A 913.6
(-1.6)
P 		610.6
(-2.4)
P 		2713.6
(3)
P 		366.4
(-3)
P 		1644
(0.3)
P 		969.4
(-1.5)
P 		2347
B 1237.2
(2.1)
P 		1336
(3)
P 		674.2
(-2.8)
P 		666.1
(-2.8)
P 		646
(-3)
P 		1254.2
(2.3)
P 		690
C 305.9
(-2.8)
P 		3961.7
(3)
P 		453.5
(-2.6)
P 		832.3
(-2)
P 		179.3
(-3)
P 		1218.9
(-1.4)
P 		3782
avr 818.9
(-2.1) 		1969.4
(3) 		1280.4
(-0.1) 		621.6
(-3) 		823.1
(-2.1) 		1147.5
(-0.7) 		1348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1458
1 2 3 4 range
A 459.7
(-1.4)
P 		95.2
(-3)
P 		124.4
(-2.9)
P 		1430.4
(3)
P 		1335
B 601.9
(0.5)
P 		134.4
(-2.8)
P 		109.3
(-3)
P 		942.1
(3)
P 		833
C 513.1
(-1.3)
P 		184.8
(-2.7)
P 		104.1
(-3)
P 		1552.9
(3)
P 		1449
avr 524.9
(-0.9) 		138.1
(-2.9) 		112.6
(-3) 		1308.5
(3) 		1196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1151
1 2 3 4 5 6 range
A 168.4
(-2.1)
P 		217.2
(-1.5)
P 		591
(3)
P 		92.9
(-3)
P 		496.1
(1.9)
P 		236
(-1.3)
P 		498
B 430.5
(2.3)
P 		444.7
(2.5)
P 		163.7
(-3)
P 		176.4
(-2.7)
P 		262.5
(-1.1)
P 		467.7
(3)
P 		304
C 113.4
(-2.7)
P 		1208.8
(3)
P 		115.4
(-2.7)
P 		167.4
(-2.4)
P 		58
(-3)
P 		408
(-1.2)
P 		1151
avr 237.4
(-1.8) 		623.6
(3) 		290
(-1.2) 		145.6
(-3) 		272.2
(-1.4) 		370.6
(-0.2) 		478
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172102_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28199
Sequence Type Exemplar sequence
Representative Public ID ZK105.G NCBI
Target Description ZK105.G_rc /REP_DB=WormBase Gene ID /WP=CE23452 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000014744 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9197429:9206849:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 6/11 Cross Hyb Matching Probes A 
NM_075710 2/11 Cross Hyb Matching Probes None
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_078408 4/11 Cross Hyb Matching Probes A 
NM_073039 4/11 Cross Hyb Matching Probes A 
NM_061393 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 7/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 6/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 6/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 4/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 4/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 4/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 4/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 5/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029502 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 6/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007905 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 4/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 4/11 Cross Hyb Matching Probes None
T02H6.3 8/11 Cross Hyb Matching Probes A 
Y116A8C.41 6/11 Cross Hyb Matching Probes A 
Y54B9A.1 4/11 Cross Hyb Matching Probes A 
B0310.4 2/11 Cross Hyb Matching Probes None
C24A3.1 1/11 Cross Hyb Matching Probes A 
C53C11.4 4/11 Cross Hyb Matching Probes A 
GENEFINDER00000029150 9/11 Negative Strand Matching Probes None
SNAP00000017447 9/11 Negative Strand Matching Probes None
SNAP00000031960 9/11 Negative Strand Matching Probes None
GENEFINDER00000031976 9/11 Negative Strand Matching Probes None
GENEFINDER00000026632 9/11 Negative Strand Matching Probes None
SNAP00000037535 9/11 Negative Strand Matching Probes None
GENEFINDER00000037541 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast BAA09729.1 receptor tyrosine kinase [Caenorhabditis elegans] 0.0
blast CAA93882 Hypothetical protein ZK1067.1 [Caenorhabditis elegans] ref|NP_495962.2| LEThal family member (let-23) [Caenorhabditis elegans] pir||E88257 protein let-23 [imported] - Caenorhabditis elegans prf||1703413A Tyr kinase 0.0
blast P24348 Let-23 receptor tyrosine-protein kinase precursor (Lethal protein 23) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.3E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.3E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.2E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.2E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.7E-9
Pfam IPR006211 EMBL-EBI Furin-like cysteine rich region 2.2E-89
Pfam IPR000719 EMBL-EBI Protein kinase 3.8E-57
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.1E-46
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014744 1 1033-1055
Sequence
Target Sequence 
>C. ELEGANS:172102_X_AT
cacgcccaaatttcagtgagaatagtgggcgtggcacccttcgtggtgagacccatcgtg
gtgagacccttcgtggtgatacccttcgtggtgagacccatcgtggtgagacccttcgtg
gtgagacccatcgtggtgagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCCCAAATTTCAGTGAGAATAG 331 199 14 Antisense
GAGAATAGTGGGCGTGGCACCCTTC 612 377 31 Antisense
TTCGTGGTGAGACCCATCGTGGTGA 582 691 53 Antisense
CGTGGTGAGACCCATCGTGGTGAGA 105 245 55 Antisense
TGGTGAGACCCTTCGTGGTGATACC 530 551 72 Antisense
GTGGTGATACCCTTCGTGGTGAGAC 311 489 86 Antisense
TGGTGATACCCTTCGTGGTGAGACC 531 551 87 Antisense
TCGTGGTGAGACCCATCGTGGTGAG 166 583 99 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 148 569 117 Antisense
GTGGTGAGACCCATCGTGGTGAGAC 314 489 131 Antisense
TGGTGAGACCCATCGTGGTGAGACC 544 551 132 Antisense
Sequence Source Affymetrix Proprietary Database