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[172101_x_at]

Description F42G9.9A /REP_DB=WormBase Gene ID /WP=CE24967 /GEN=ptl-1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 22      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 610
1 2 3 4 range
A 724.8
(3)
P 		418.6
(-1.3)
P 		297.7
(-3)
P 		647.3
(1.9)
P 		427
B 651.6
(0.5)
P 		313.9
(-2.9)
P 		305.6
(-3)
P 		890.5
(3)
P 		585
C 701.8
(2.4)
P 		454.2
(-0.8)
P 		280.3
(-3)
P 		747.7
(3)
P 		467
avr 692.7
(2.1) 		395.6
(-1.7) 		294.5
(-3) 		761.8
(3) 		467

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 548
1 2 3 4 5 6 range
A 595.5
(3)
P 		560.8
(2.3)
P 		403.7
(-0.8)
P 		289
(-3)
P 		339.3
(-2)
P 		323.6
(-2.3)
P 		307
B 820
(3)
P 		512.1
(-0.6)
P 		497.2
(-0.8)
P 		335.3
(-2.7)
P 		344.9
(-2.6)
P 		313.2
(-3)
P 		507
C 652.7
(3)
P 		506.1
(0.7)
P 		346.5
(-1.8)
P 		279.2
(-2.9)
P 		289.2
(-2.7)
P 		272
(-3)
P 		381
avr 689.4
(3) 		526.3
(0.5) 		415.8
(-1.2) 		301.2
(-3) 		324.5
(-2.6) 		302.9
(-3) 		388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 263.9
(3)
P 		90.9
(-2.6)
P 		77.8
(-3)
P 		94.7
(-2.5)
P 		186
B 207.8
(3)
P 		77.5
(-2.7)
P 		70.8
(-3)
P 		189.8
(2.2)
P 		137
C 232.3
(3)
P 		130.6
(-1.5)
P 		97.7
(-3)
P 		126.1
(-1.7)
P 		135
avr 234.7
(3) 		99.7
(-2.3) 		82.1
(-3) 		136.9
(-0.8) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 109.8
(-1.3)
P 		199.5
(3)
P 		87.9
(-2.3)
P 		73.3
(-3)
P 		102.4
(-1.6)
P 		78.8
(-2.7)
P 		126
B 285.3
(3)
P 		170.5
(-0.5)
P 		120.7
(-2)
P 		88.8
(-3)
P 		140.1
(-1.4)
P 		116.8
(-2.1)
P 		197
C 241.9
(3)
P 		154.4
(0.2)
P 		88.2
(-2)
P 		56.1
(-3)
P 		93.6
(-1.8)
P 		91
(-1.9)
P 		186
avr 212.3
(3) 		174.8
(1.4) 		98.9
(-1.9) 		72.7
(-3) 		112
(-1.3) 		95.5
(-2) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172101_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8357
Sequence Type Exemplar sequence
Representative Public ID F42G9.9A NCBI
Target Description F42G9.9A /REP_DB=WormBase Gene ID /WP=CE24967 /GEN=ptl-1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027407(9), NM_001027406(9), NM_001027405(11), NM_001027408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027407 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 9/11 None
NM_001027406 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 9/11 None
NM_001027405 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 11/11 None
NM_001027408 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 11/11 None
GENEFINDER00000038506 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:765195:770845:1 10/11 None
SNAP00000038493 ENSEMBL cdna:SNAP chromosome:CEL140:III:769889:770845:1 10/11 None
F42G9.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:763805:771327:1 gene:F42G9.9 9/11 None
F42G9.9c ENSEMBL cdna:known chromosome:CEL140:III:765190:771377:1 gene:F42G9.9 9/11 A 
F42G9.9b.2 ENSEMBL cdna:known chromosome:CEL140:III:765190:771162:1 gene:F42G9.9 9/11 None
F42G9.9a ENSEMBL cdna:known chromosome:CEL140:III:765195:770878:1 gene:F42G9.9 11/11 None
F42G9.9d ENSEMBL cdna:known chromosome:CEL140:III:768553:770889:1 gene:F42G9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:765194-770804(+) 83.33 100.0
Public Domain and Genome References
Ensembl F42G9.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70645 Protein with tau-like repeats protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022576.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAB97090.1| PTL-1A protein [Caenorhabditis elegans] 1.0E-174
blast AAA80686 TAU-1a 1.0E-174
blast AAK70646 Protein with tau-like repeats protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022577.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] 1.0E-169
blast AAA80687 TAU-1b 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 8.0E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.6E-9
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.8E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.7E-8
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.2E-10
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 8.0E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.6E-9
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.8E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.7E-8
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 3.1E-6
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 8.0E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.6E-9
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.8E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.7E-8
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.2E-10
Sequence
Target Sequence 
>C. ELEGANS:172101_X_AT
ccatctccgagacccatatcaaaaatgtctcgagaacggtcggatgttcaaaaatccacg
tctacgcgaagcatcgataatgttggaagaatgacgccaaaggttaacgccaaatttgta
aatgtgaagagcaaagtgggaagtgtcaccaatcataaggcgggcggcggaaatgtggaa
attttctcggagaaaagactctacaacgcccaatccaaagttggctccttgaaaaacgca
acacacgttgccggaggcggaaacgttcaaatcgaaaacaggaagctagatttttcggca
gcttcaccaaaggttggctcgaaaaccaattatcagccagcaaagtctgacgtgaagata
gtttcggagaagttgacttggcaagctaaatcaaaagttgggtcaatggacaacgcagcg
cataagcctgctggtggaaatgttcagatattaagtcaaaaattgaactggaaagccgag
agtaaggttgggtcaaaggacaatatgaatcatcggcctggtggtggaaatgttcaaatt
ttcgacgaaaaaatccgctacgtgtcgacggactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTCCGAGACCCATATCAAAAA 549 271 760 Antisense
AAATCCACGTCTACGCGAAGCATCG 673 117 811 Antisense
GAATGACGCCAAAGGTTAACGCCAA 674 329 848 Antisense
GTCACCAATCATAAGGCGGGCGGCG 323 465 904 Antisense
AGAAAAGACTCTACAACGCCCAATC 680 71 950 Antisense
ACGCCCAATCCAAAGTTGGCTCCTT 364 91 965 Antisense
CAACACACGTTGCCGGAGGCGGAAA 573 187 998 Antisense
CTAGATTTTTCGGCAGCTTCACCAA 356 225 1045 Antisense
AACGCAGCGCATAAGCCTGCTGGTG 200 145 1171 Antisense
GAATCATCGGCCTGGTGGTGGAAAT 113 325 1266 Antisense
AAATCCGCTACGTGTCGACGGACTC 475 115 1310 Antisense
Sequence Source Affymetrix Proprietary Database