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[172099_x_at]

Description Y22D7AL.V /REP_DB=WormBase Gene ID /WP=CE26509 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 26      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 7.1
(-3)
A 		94
(3)
A 		49.8
(-0.1)
A 		92.3
(2.9)
A 		87
B 5.2
(-2.8)
A 		3.1
(-3)
A 		31.3
(-0.9)
A 		84.8
(3)
P 		82
C 30.7
(-1.6)
A 		6.1
(-2.9)
A 		4.2
(-3)
A 		116.5
(3)
A 		112
avr 14.3
(-3) 		34.4
(-1.6) 		28.4
(-2) 		97.9
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 37.9
(3)
A 		16.8
(-0.7)
A 		3.3
(-3)
A 		3.3
(-3)
A 		8.2
(-2.2)
A 		3.8
(-2.9)
A 		35
B 29
(3)
A 		6.5
(-2.6)
A 		15.9
(-0.2)
A 		5.5
(-2.8)
A 		18.3
(0.3)
A 		4.8
(-3)
A 		24
C 3
(-3)
A 		56.6
(3)
A 		6.3
(-2.6)
A 		27
(-0.3)
A 		3.5
(-2.9)
A 		36.8
(0.8)
A 		54
avr 23.3
(1.9) 		26.6
(3) 		8.5
(-3) 		11.9
(-1.9) 		10
(-2.5) 		15.1
(-0.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.6
(-3)
A 		20.4
(3)
A 		13
(0.5)
A 		13.5
(0.7)
A 		18
B 1.7
(-2.7)
A 		0.8
(-3)
A 		7.3
(-0.7)
A 		18.1
(3)
P 		17
C 10.2
(-0.1)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		19.6
(3)
A 		18
avr 4.8
(-3) 		7.6
(-1.6) 		7.3
(-1.8) 		17.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7
(3)
A 		6
(2)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		2.5
(-1.3)
A 		0.9
(-2.8)
A 		6
B 10.1
(3)
A 		2.1
(-2.6)
A 		3.9
(-1.3)
A 		1.5
(-3)
A 		7.4
(1.1)
A 		1.8
(-2.8)
A 		9
C 1.1
(-3)
A 		17.3
(3)
A 		1.6
(-2.8)
A 		5.4
(-1.4)
A 		1.1
(-3)
A 		12.3
(1.1)
A 		16
avr 6.1
(0.8) 		8.5
(3) 		2.1
(-3) 		2.6
(-2.5) 		3.7
(-1.5) 		5
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172099_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19039
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.V NCBI
Target Description Y22D7AL.V /REP_DB=WormBase Gene ID /WP=CE26509 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065032 NCBI Caenorhabditis elegans Y22D7AL.2 (Y22D7AL.2) mRNA, complete cds. 11/11 None
Y22D7AL.2 ENSEMBL cdna:known chromosome:CEL140:III:1642339:1643368:1 gene:Y22D7AL.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002270 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005530 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031777 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044342 1/11 Cross Hyb Matching Probes None
K09A9.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.2
Entrez Gene 189501 Entrez gene
SwissProt Q965P6 EMBL-EBI
WormBase CE26509 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84591 Hypothetical protein Y22D7AL.2 [Caenorhabditis elegans] ref|NP_497433.1| Y22D7AL.2 [Caenorhabditis elegans] 1.0E-105
blast CAB04101 Hypothetical protein F11D11.10 [Caenorhabditis elegans] ref|NP_507656.1| F11D11.10 [Caenorhabditis elegans] 9.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172099_X_AT
tgttcggcaaatcggcaaatctggcaatttgccgatttgccggaaaaacggaattttccg
gagtttttcggaaaattgtggttttggatcgtgtgcccagctggttcaagagacaattta
tgtcaataaaagagtattttcgaatgatcacactagaattcaaaaacactgacactaaac
tcattaatctcgacgcccagctgcggaaccccgaacgtgtcggccgcttccaaaaacaac
cacctcttcacacttcattgcgcacacaccaaactactagtttcacgtcaaactgcggaa
ccccgaacgtgtcggctgcttccaaacaaccacctcttcacacttcattgcgcacacacc
aaactactagtttcacgtcaaactgcggaaccccgaacgtgtcggccgcttccaaaaaca
accacctcttcacacttcattgcgcacacaccaaactactagtttcacgtcaaactgcgg
aaccccgaacgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGGCAAATCGGCAAATCTGGC 335 561 14 Antisense
TCTGGCAATTTGCCGATTTGCCGGA 621 605 33 Antisense
TGTGGTTTTGGATCGTGTGCCCAGC 270 555 90 Antisense
GTGTGCCCAGCTGGTTCAAGAGACA 529 487 104 Antisense
GAGTATTTTCGAATGATCACACTAG 456 399 145 Antisense
CAAAAACACTGACACTAAACTCATT 544 189 174 Antisense
CTAAACTCATTAATCTCGACGCCCA 412 225 188 Antisense
TTGCGCACACACCAAACTACTAGTT 572 701 271 Antisense
TAGTTTCACGTCAAACTGCGGAACC 457 653 291 Antisense
GCGCACACACCAAACTACTAGTTTC 503 287 455 Antisense
TCAAACTGCGGAACCCCGAACGTGT 174 625 483 Antisense
Sequence Source Affymetrix Proprietary Database