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[172098_x_at]

Description Y47D7A.2 /REP_DB=WormBase Gene ID /WP=CE26109 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 39.5
(-3)
A 		49.2
(3)
A 		46.6
(1.4)
A 		46.7
(1.5)
A 		10
B 28.9
(-3)
A 		73
(3)
A 		31.2
(-2.7)
A 		33.6
(-2.4)
A 		44
C 7.5
(-3)
A 		51.5
(-0.4)
A 		20.2
(-2.2)
A 		107.6
(3)
A 		100
avr 25.3
(-3) 		57.9
(2.2) 		32.7
(-1.8) 		62.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 32.6
(-0.6)
A 		52.1
(2.4)
A 		39.2
(0.4)
A 		16.6
(-3)
A 		56.2
(3)
A 		45.9
(1.4)
A 		40
B 31.2
(-0.9)
A 		37.8
(-0.5)
A 		20.4
(-1.7)
A 		29.2
(-1.1)
A 		86.8
(3)
P 		1.9
(-3)
A 		85
C 48.6
(-0.8)
A 		52.3
(-0.5)
A 		29.3
(-1.9)
A 		11
(-3)
A 		111.6
(3)
P 		16.6
(-2.7)
A 		101
avr 37.5
(-1.3) 		47.4
(-0.4) 		29.6
(-2) 		18.9
(-3) 		84.9
(3) 		21.5
(-2.8) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.4
(3)
A 		10.7
(0.1)
A 		12.2
(1.3)
A 		6.8
(-3)
A 		8
B 9.2
(-1.9)
A 		18
(3)
A 		7.2
(-3)
A 		7.2
(-3)
A 		11
C 2.5
(-3)
A 		14.8
(1.7)
A 		7.1
(-1.2)
A 		18.1
(3)
A 		16
avr 8.7
(-3) 		14.5
(3) 		8.8
(-2.9) 		10.7
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6
(-2.2)
A 		18.5
(3)
A 		8.5
(-1.2)
A 		4.2
(-3)
A 		17
(2.4)
A 		11.2
(-0.1)
A 		14
B 10.9
(-1.2)
A 		12.6
(-0.9)
A 		5
(-2.3)
A 		7.7
(-1.8)
A 		35.3
(3)
P 		0.7
(-3)
A 		35
C 18
(-0.2)
A 		16
(-0.6)
A 		7.5
(-2.1)
A 		2.2
(-3)
A 		36.1
(3)
P 		5.5
(-2.4)
A 		34
avr 11.6
(-1.3) 		15.7
(-0.3) 		7
(-2.4) 		4.7
(-3) 		29.5
(3) 		5.8
(-2.7) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172098_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15310
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.2 NCBI
Target Description Y47D7A.2 /REP_DB=WormBase Gene ID /WP=CE26109 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071818 NCBI Caenorhabditis elegans Y47D7A.2 (Y47D7A.2) mRNA, complete cds. 11/11 None
SNAP00000043261 ENSEMBL cdna:SNAP chromosome:CEL140:V:4420089:4420502:1 11/11 None
GENEFINDER00000043280 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4419896:4420502:1 11/11 None
Y47D7A.2 ENSEMBL cdna:known chromosome:CEL140:V:4420089:4420560:1 gene:Y47D7A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071817 2/11 Cross Hyb Matching Probes A 
NM_071823 2/11 Cross Hyb Matching Probes A 
SNAP00000043260 2/11 Cross Hyb Matching Probes None
SNAP00000043267 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043274 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043283 2/11 Cross Hyb Matching Probes None
Y47D7A.7 2/11 Cross Hyb Matching Probes A 
Y47D7A.11 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4420088-4420502(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.2
Entrez Gene 178838 Entrez gene
SwissProt Q9N3V0 EMBL-EBI
WormBase CE26109 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60640 Hypothetical protein Y47D7A.2 [Caenorhabditis elegans] ref|NP_504219.1| Y47D7A.2 [Caenorhabditis elegans] 2.0E-30
blast AAF60640 Hypothetical protein Y47D7A.2 [Caenorhabditis elegans] ref|NP_504219.1| Y47D7A.2 [Caenorhabditis elegans] 4.0E-30
blast AAF60636 Hypothetical protein Y47D7A.7 [Caenorhabditis elegans] ref|NP_504218.1| Y47D7A.7 [Caenorhabditis elegans] 2.0E-25
blast AAF60636 Hypothetical protein Y47D7A.7 [Caenorhabditis elegans] ref|NP_504218.1| Y47D7A.7 [Caenorhabditis elegans] 3.0E-25
blast CAE56037 Hypothetical protein CBG23603 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172098_X_AT
ccttttggtcatccttgttcaatgtggatacccagttgctgagaatagctatccaactac
accatcctatccaacaccaccaccatcctacccaactccgaagaagtatccagtcgctcc
aacatacccatctacaccatcctactctgctccaccagctcaatctgcttattcttcaag
tgacaatcaagaagatactgaatctgaatcagttactggtgctgcttcaacatcggagta
tcgcaagcgcgccaaggcacgtaccgcgcacaatcggcaattccaacgacgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTTTGGTCATCCTTGTTCAATGT 606 267 39 Antisense
GTTCAATGTGGATACCCAGTTGCTG 285 445 55 Antisense
GAATAGCTATCCAACTACACCATCC 182 327 81 Antisense
ATCCTACCCAACTCCGAAGAAGTAT 308 37 123 Antisense
CGAAGAAGTATCCAGTCGCTCCAAC 521 253 137 Antisense
CCACCAGCTCAATCTGCTTATTCTT 609 273 190 Antisense
AATCAGTTACTGGTGCTGCTTCAAC 208 171 245 Antisense
GTGCTGCTTCAACATCGGAGTATCG 519 479 257 Antisense
CATCGGAGTATCGCAAGCGCGCCAA 134 211 269 Antisense
TACCGCGCACAATCGGCAATTCCAA 262 647 300 Antisense
AATCGGCAATTCCAACGACGTGCTC 271 169 310 Antisense
Sequence Source Affymetrix Proprietary Database