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[172097_x_at]

Description Y22D7AL.D /REP_DB=WormBase Gene ID /WP=CE23436 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 92      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.8
(3)
A 		3.4
(-3)
A 		4.6
(-2.6)
A 		4.8
(-2.6)
A 		20
B 2.2
(-3)
A 		5.5
(-1.3)
A 		4.5
(-1.8)
A 		13.7
(3)
A 		12
C 1.8
(-0.9)
A 		2
(-0)
A 		1.3
(-3)
A 		2.7
(3)
A 		1
avr 9.3
(3) 		3.6
(-2.9) 		3.5
(-3) 		7.1
(0.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 23.9
(3)
A 		15
(0.7)
A 		2.1
(-2.7)
A 		4.5
(-2)
A 		15.9
(0.9)
A 		0.8
(-3)
A 		23
B 4.6
(-1.2)
A 		1.4
(-2.9)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		12.5
(3)
A 		2
(-2.6)
A 		11
C 1
(-3)
A 		9.4
(-1.2)
A 		29.6
(3)
A 		2.5
(-2.7)
A 		19.8
(0.9)
A 		4
(-2.4)
A 		29
avr 9.8
(0.3) 		8.6
(-0.3) 		11
(0.8) 		2.7
(-2.8) 		16.1
(3) 		2.3
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.7
(3)
A 		0.7
(-3)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		8
B 0.7
(-3)
A 		1.4
(-1.1)
A 		1
(-2.2)
A 		2.9
(3)
A 		2
C 0.6
(3)
A 		0.6
(3)
A 		0.4
(-3)
A 		0.5
(0)
A 		0
avr 3.3
(3) 		0.9
(-3) 		0.9
(-3) 		1.4
(-1.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.4
(1.9)
A 		5.3
(3)
A 		0.4
(-2.8)
A 		1.1
(-1.9)
A 		4.8
(2.4)
A 		0.2
(-3)
A 		5
B 1.6
(-1.4)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		0.3
(-3)
A 		5.1
(3)
A 		0.7
(-2.5)
A 		5
C 0.4
(-3)
A 		2.9
(-0.9)
A 		7.5
(3)
A 		0.5
(-2.9)
A 		6.4
(2.1)
A 		1.3
(-2.2)
A 		7
avr 2.1
(-1.1) 		2.9
(-0.1) 		2.7
(-0.4) 		0.6
(-3) 		5.4
(3) 		0.7
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172097_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19059
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.D NCBI
Target Description Y22D7AL.D /REP_DB=WormBase Gene ID /WP=CE23436 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y22D7AL.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AL.D Y22D7AL.D /REP_DB=WormBase Gene ID /WP=CE23436 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065035 11/11 Negative Strand Matching Probes A 
GENEFINDER00000002285 11/11 Negative Strand Matching Probes None
Y22D7AL.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1652493-1652652(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172097_X_AT
tgaattccgtggagtccaccgaggccgaagacgatgatggtcgagtttttgtcggcgaca
ccatatttcgagtagtaaccgatgatgaagacgatgacgacgatcttgagcaggacatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTCCGTGGAGTCCACCGAGGC 599 559 14 Antisense
AGTCCACCGAGGCCGAAGACGATGA 332 59 26 Antisense
CCGAGGCCGAAGACGATGATGGTCG 710 261 32 Antisense
GATGATGGTCGAGTTTTTGTCGGCG 452 407 46 Antisense
GGTCGAGTTTTTGTCGGCGACACCA 495 483 52 Antisense
TTTGTCGGCGACACCATATTTCGAG 375 665 61 Antisense
GTCGGCGACACCATATTTCGAGTAG 127 473 64 Antisense
GACACCATATTTCGAGTAGTAACCG 410 343 70 Antisense
GTAACCGATGATGAAGACGATGACG 337 461 88 Antisense
GACGATGACGACGATCTTGAGCAGG 149 379 103 Antisense
GACGACGATCTTGAGCAGGACATAG 201 379 109 Antisense
Sequence Source Affymetrix Proprietary Database