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[172096_x_at]

Description C06E1.6 /REP_DB=WormBase Gene ID /WP=CE00061 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 4.1
(-3)
A 		36
(0.1)
A 		5.9
(-2.8)
A 		65.4
(3)
A 		61
B 20.2
(3)
A 		7.1
(-1.7)
A 		3.4
(-3)
A 		8.5
(-1.2)
A 		17
C 2.1
(-3)
A 		2.3
(-3)
A 		14.1
(-0.2)
A 		28.2
(3)
A 		26
avr 8.8
(-2.8) 		15.1
(-1.3) 		7.8
(-3) 		34
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 33.1
(1)
A 		4.7
(-2.7)
A 		24.1
(-0.2)
A 		30.6
(0.6)
A 		48.6
(3)
M 		2.7
(-3)
A 		46
B 21.9
(-1.6)
A 		32.5
(-0)
P 		52.2
(3)
A 		13
(-3)
A 		45.2
(1.9)
P 		19.5
(-2)
A 		39
C 34.2
(1.7)
A 		42.9
(3)
A 		42.6
(3)
A 		37.6
(2.2)
A 		2.2
(-3)
A 		26.8
(0.6)
A 		41
avr 29.7
(0.5) 		26.7
(-0.3) 		39.6
(3) 		27.1
(-0.2) 		32
(1) 		16.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.5
(-3)
A 		7.8
(1.7)
A 		1.5
(-3)
A 		9.6
(3)
A 		8
B 6.4
(3)
A 		1.8
(-1.9)
A 		0.8
(-3)
A 		1.8
(-1.9)
A 		6
C 0.7
(-3)
A 		0.7
(-3)
A 		4.9
(3)
A 		4.8
(2.9)
A 		4
avr 2.9
(-2) 		3.4
(-1) 		2.4
(-3) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.1
(-0.7)
A 		1.7
(-2.6)
A 		5.2
(-1.1)
A 		7.8
(0)
A 		14.7
(3)
M 		0.7
(-3)
A 		14
B 7.6
(-1.3)
A 		10.8
(-0)
P 		12.7
(0.7)
A 		3.4
(-3)
A 		18.4
(3)
P 		7.3
(-1.4)
A 		15
C 12.7
(2.8)
A 		13.1
(3)
A 		10.9
(1.9)
A 		7.6
(0.3)
A 		0.7
(-3)
A 		9
(1)
A 		12
avr 8.8
(0.3) 		8.5
(-0) 		9.6
(1.2) 		6.3
(-2.4) 		11.3
(3) 		5.7
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172096_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6922
Sequence Type Exemplar sequence
Representative Public ID C06E1.6 NCBI
Target Description C06E1.6 /REP_DB=WormBase Gene ID /WP=CE00061 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066489 NCBI Caenorhabditis elegans C06E1.6 (C06E1.6) mRNA, complete cds. 11/11 None
SNAP00000034818 ENSEMBL cdna:SNAP chromosome:CEL140:III:8590736:8592505:-1 11/11 None
GENEFINDER00000034829 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8590736:8592995:-1 11/11 None
C06E1.6 ENSEMBL cdna:known chromosome:CEL140:III:8590736:8590885:-1 gene:C06E1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8590730-8590880(-) 100.0 100.0
chrIII:8589233-8589386(-) 92.0 92.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.6
Entrez Gene 182315 Entrez gene
SwissProt P34301 EMBL-EBI
WormBase CE00061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27932 Hypothetical protein C06E1.7 [Caenorhabditis elegans] ref|NP_498891.2| C06E1.7 [Caenorhabditis elegans] sp|P34302|YKQ7_CAEEL Putative glycosyl transferase C06E1.7 in chromosome III 0.0
blast AAA27932 Hypothetical protein C06E1.7 [Caenorhabditis elegans] ref|NP_498891.2| C06E1.7 [Caenorhabditis elegans] sp|P34302|YKQ7_CAEEL Putative glycosyl transferase C06E1.7 in chromosome III 1.0E-138
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-67
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 5.0E-63
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 8.0E-52
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.6E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.6E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498890.1 1 2-24
C06E1.6 1 2-24
SNAP00000034818 1 268-290
GENEFINDER00000034829 2 7-26,369-391
Sequence
Target Sequence 
>C. ELEGANS:172096_X_AT
gatcgtttattctgtattcatcttcgctgttttggcaatttcatcggttactggaatctt
cttaccaggaggaggaggcaagaagtgtggaggacatggtgaatatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTTTATTCTGTATTCATCTTC 104 419 15 Antisense
TATTCTGTATTCATCTTCGCTGTTT 23 665 22 Antisense
GTATTCATCTTCGCTGTTTTGGCAA 317 453 28 Antisense
TCATCTTCGCTGTTTTGGCAATTTC 180 621 32 Antisense
TGGCAATTTCATCGGTTACTGGAAT 199 545 47 Antisense
TCATCGGTTACTGGAATCTTCTTAC 508 621 55 Antisense
ATCGGTTACTGGAATCTTCTTACCA 333 3 57 Antisense
GGAATCTTCTTACCAGGAGGAGGAG 130 533 67 Antisense
TCTTCTTACCAGGAGGAGGAGGCAA 666 615 71 Antisense
GGAGGAGGCAAGAAGTGTGGAGGAC 501 515 85 Antisense
GTGTGGAGGACATGGTGAATATGGA 73 485 99 Antisense
Sequence Source Affymetrix Proprietary Database